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    AMPH amphiphysin [ Tyto alba (common barn owl) ]

    Gene ID: 104367606, updated on 26-Nov-2024

    Summary

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    Gene symbol
    AMPH
    Gene description
    amphiphysin
    Locus tag
    N341_02002
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tyto alba
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Tytonidae; Tyto
    Orthologs
    human mouse all
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    Genomic context

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    See AMPH in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881322.1 (13109558..13231341, complement)
    101 previous assembly genome_assembly_l500 (GCF_902150015.1) Unplaced Scaffold NW_022671573.1 (2046998..2112138, complement)

    NW_024881322.1Genomic Context describing neighboring genes Neighboring gene T-cell receptor gamma chain V region V108B-like Neighboring gene T cell receptor gamma variable 9-like Neighboring gene VPS41 subunit of HOPS complex Neighboring gene POU class 6 homeobox 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in synaptic vesicle endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    amphiphysin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference T.alba_DEE_v4.0

    Genomic

    1. NW_024881322.1 Reference T.alba_DEE_v4.0

      Range
      13109558..13231341 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042806404.1 → XP_042662338.1  amphiphysin isoform X4

      Conserved Domains (2) summary
      cd07611
      Location:26 → 236
      BAR_Amphiphysin_I_II; The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II
      cd12140
      Location:1105 → 1176
      SH3_Amphiphysin_I; Src Homology 3 domain of Amphiphysin I

    2. XM_042806403.1 → XP_042662337.1  amphiphysin isoform X3

      Conserved Domains (3) summary
      cd07611
      Location:26 → 236
      BAR_Amphiphysin_I_II; The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II
      cd12140
      Location:1155 → 1226
      SH3_Amphiphysin_I; Src Homology 3 domain of Amphiphysin I
      pfam14962
      Location:1048 → 1138
      AIF-MLS; Mitochondria localization Sequence

    3. XM_042806401.1 → XP_042662335.1  amphiphysin isoform X1

      Conserved Domains (3) summary
      cd07611
      Location:26 → 236
      BAR_Amphiphysin_I_II; The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II
      cd12140
      Location:1214 → 1285
      SH3_Amphiphysin_I; Src Homology 3 domain of Amphiphysin I
      PRK10811
      Location:1009 → 1166
      rne; ribonuclease E; Reviewed

    4. XM_042806402.1 → XP_042662336.1  amphiphysin isoform X2

      Conserved Domains (3) summary
      cd07611
      Location:26 → 236
      BAR_Amphiphysin_I_II; The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II
      cd12140
      Location:1211 → 1282
      SH3_Amphiphysin_I; Src Homology 3 domain of Amphiphysin I
      PRK10811
      Location:1006 → 1163
      rne; ribonuclease E; Reviewed

    5. XM_042806407.1 → XP_042662341.1  amphiphysin isoform X7

      Conserved Domains (2) summary
      cd07611
      Location:26 → 236
      BAR_Amphiphysin_I_II; The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II
      cd12140
      Location:675 → 746
      SH3_Amphiphysin_I; Src Homology 3 domain of Amphiphysin I

    6. XM_042806406.1 → XP_042662340.1  amphiphysin isoform X6

      Conserved Domains (3) summary
      cd07611
      Location:26 → 236
      BAR_Amphiphysin_I_II; The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II
      cd12140
      Location:725 → 796
      SH3_Amphiphysin_I; Src Homology 3 domain of Amphiphysin I
      pfam14962
      Location:618 → 708
      AIF-MLS; Mitochondria localization Sequence

    7. XM_042806405.1 → XP_042662339.1  amphiphysin isoform X5

      Conserved Domains (3) summary
      cd07611
      Location:26 → 236
      BAR_Amphiphysin_I_II; The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II
      cd12140
      Location:784 → 855
      SH3_Amphiphysin_I; Src Homology 3 domain of Amphiphysin I
      PRK10811
      Location:579 → 736
      rne; ribonuclease E; Reviewed

    8. XM_042806410.1 → XP_042662344.1  amphiphysin isoform X10

      Conserved Domains (3) summary
      cd07611
      Location:26 → 236
      BAR_Amphiphysin_I_II; The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II
      cd12140
      Location:558 → 629
      SH3_Amphiphysin_I; Src Homology 3 domain of Amphiphysin I
      pfam14962
      Location:451 → 541
      AIF-MLS; Mitochondria localization Sequence

    9. XM_042806408.1 → XP_042662342.1  amphiphysin isoform X8

      Conserved Domains (3) summary
      cd07611
      Location:26 → 236
      BAR_Amphiphysin_I_II; The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II
      cd12140
      Location:617 → 688
      SH3_Amphiphysin_I; Src Homology 3 domain of Amphiphysin I
      PRK10811
      Location:412 → 569
      rne; ribonuclease E; Reviewed

    10. XM_042806409.1 → XP_042662343.1  amphiphysin isoform X9

      Conserved Domains (3) summary
      cd07611
      Location:26 → 236
      BAR_Amphiphysin_I_II; The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II
      cd12140
      Location:614 → 685
      SH3_Amphiphysin_I; Src Homology 3 domain of Amphiphysin I
      PRK10811
      Location:409 → 566
      rne; ribonuclease E; Reviewed
    Nucleotide Protein
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