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    RhiXN_12300 Cys/Met metabolism PLP-dependent enzyme [ Rhizoctonia solani ]

    Gene ID: 67034578, updated on 7-Dec-2023

    Summary

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    Gene symbol
    RhiXN_12300
    Gene description
    Cys/Met metabolism PLP-dependent enzyme
    Locus tag
    RhiXN_12300
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rhizoctonia solani (strain: AG-1 IA, isolate: XN)
    Lineage
    Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Cantharellales; Ceratobasidiaceae; Rhizoctonia
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    Genomic context

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    See RhiXN_12300 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    5
    Sequence:
    Chromosome: 15; NC_057384.1 (1646905..1648467, complement)

    Chromosome 15 - NC_057384.1Genomic Context describing neighboring genes Neighboring gene glycoside hydrolase family 39 protein Neighboring gene enoyl-CoA hydratase/isomerase family protein Neighboring gene Cys/Met metabolism PLP-dependent enzyme Neighboring gene Ras-related protein Rab-4B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_057384.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cystathionine gamma-lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cysteine biosynthetic process via cystathionine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transsulfuration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Cys/Met metabolism PLP-dependent enzyme

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_057384.1 Reference assembly

      Range
      1646905..1648467 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043332115.1 → XP_043186876.1  Cys/Met metabolism PLP-dependent enzyme [Rhizoctonia solani]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8H3CQK3, A0A8H7LTK2
      Conserved Domains (1) summary
      cl18945
      Location:12 → 422
      AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
    Nucleotide Protein
    Heading Accession and Version

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