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    VSIG1 V-set and immunoglobulin domain containing 1 [ Gallus gallus (chicken) ]

    Gene ID: 414795, updated on 3-Dec-2024

    Summary

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    Symbol
    VSIG1provided by CGNC
    Full Name
    V-set and immunoglobulin domain containing 1provided by CGNC
    Primary source
    CGNC:6282
    See related
    Ensembl:ENSGALG00010015815
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    CHT1
    Orthologs
    human mouse all
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    Genomic context

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    See VSIG1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (14076965..14100984, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (14109308..14133386, complement)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene collagen type IV alpha 6 chain Neighboring gene autophagy related 4A cysteine peptidase Neighboring gene proteasome 26S subunit, non-ATPase 10 Neighboring gene synaptotagmin like 2 like Neighboring gene RAB39B, member RAS oncogene family Neighboring gene VHL binding protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CTX, a Xenopus thymocyte receptor, defines a molecular family conserved throughout vertebrates. Chrétien I, et al. Eur J Immunol, 1998 Dec. PMID 9862345
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in epithelial cell morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in maintenance of gastrointestinal epithelium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    V-set and immunoglobulin domain-containing protein 1
    Names
    ChT1 thymocyte antigen

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001745.2 → NP_001001745.2  V-set and immunoglobulin domain-containing protein 1 precursor

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000071
      UniProtKB/Swiss-Prot
      Q9PWR4, Q9YGH1, Q9YGV5
      UniProtKB/TrEMBL
      F1P1Q0
      Related
      ENSGALP00010021979.1, ENSGALT00010038089.1
      Conserved Domains (3) summary
      smart00406
      Location:38 → 117
      IGv; Immunoglobulin V-Type
      smart00409
      Location:158 → 226
      IG; Immunoglobulin
      cd00096
      Location:37 → 45
      Ig; Ig strand B [structural motif]

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      14076965..14100984 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025149543.3 → XP_025005311.1  V-set and immunoglobulin domain-containing protein 1 isoform X2

      Conserved Domains (2) summary
      pfam07686
      Location:27 → 172
      V-set; Immunoglobulin V-set domain
      pfam13927
      Location:189 → 250
      Ig_3; Immunoglobulin domain

    2. XM_025149542.3 → XP_025005310.1  V-set and immunoglobulin domain-containing protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q9PWR4, Q9YGH1, Q9YGV5
      UniProtKB/TrEMBL
      A0A8V0YV78
      Related
      ENSGALP00010021977.1, ENSGALT00010038086.1
      Conserved Domains (2) summary
      pfam07686
      Location:27 → 172
      V-set; Immunoglobulin V-set domain
      pfam13927
      Location:189 → 250
      Ig_3; Immunoglobulin domain

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      14109308..14133386 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046915658.1 → XP_046771614.1  V-set and immunoglobulin domain-containing protein 1 isoform X2

    2. XM_046915657.1 → XP_046771613.1  V-set and immunoglobulin domain-containing protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q9PWR4, Q9YGH1, Q9YGV5
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9PWR4.1 GenPept UniProtKB/Swiss-Prot:Q9PWR4

    Gene LinkOut

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    Research Materials