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    LOC110609256 CWF19-like protein 2 [ Manihot esculenta (cassava) ]

    Gene ID: 110609256, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC110609256
    Gene description
    CWF19-like protein 2
    Locus tag
    MANES_02G210300v8
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Manihot esculenta
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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    Genomic context

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    See LOC110609256 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current M.esculenta_v8 (GCF_001659605.2) 2 NC_035162.2 (24600584..24607998)
    100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG2 NC_035162.1 (21692878..21700288, complement)

    Chromosome 2 - NC_035162.2Genomic Context describing neighboring genes Neighboring gene AP-1 complex subunit sigma-1 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 Neighboring gene uncharacterized mitochondrial protein AtMg00810-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of post-mRNA release spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CWF19-like protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference M.esculenta_v8 Primary Assembly

    Genomic

    1. NC_035162.2 Reference M.esculenta_v8 Primary Assembly

      Range
      24600584..24607998
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021748707.2 → XP_021604399.1  CWF19-like protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A251LL27
      Conserved Domains (2) summary
      pfam04676
      Location:681 → 778
      CwfJ_C_2; Protein similar to CwfJ C-terminus 2
      pfam04677
      Location:551 → 672
      CwfJ_C_1; Protein similar to CwfJ C-terminus 1

    2. XM_021748706.2 → XP_021604398.1  CWF19-like protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A251LL27
      Conserved Domains (2) summary
      pfam04676
      Location:681 → 778
      CwfJ_C_2; Protein similar to CwfJ C-terminus 2
      pfam04677
      Location:551 → 672
      CwfJ_C_1; Protein similar to CwfJ C-terminus 1

    3. XM_043954501.1 → XP_043810436.1  CWF19-like protein 2 isoform X2

      Conserved Domains (2) summary
      pfam04677
      Location:521 → 642
      CwfJ_C_1; Protein similar to CwfJ C-terminus 1
      pfam04676
      Location:651 → 748
      CwfJ_C_2; Protein similar to CwfJ C-terminus 2

    4. XM_021748708.2 → XP_021604400.1  CWF19-like protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A251LL27
      Conserved Domains (2) summary
      pfam04676
      Location:681 → 778
      CwfJ_C_2; Protein similar to CwfJ C-terminus 2
      pfam04677
      Location:551 → 672
      CwfJ_C_1; Protein similar to CwfJ C-terminus 1

    5. XM_021748709.2 → XP_021604401.1  CWF19-like protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A251LL27
      Conserved Domains (2) summary
      pfam04676
      Location:681 → 778
      CwfJ_C_2; Protein similar to CwfJ C-terminus 2
      pfam04677
      Location:551 → 672
      CwfJ_C_1; Protein similar to CwfJ C-terminus 1

    6. XM_021748710.2 → XP_021604402.1  CWF19-like protein 2 isoform X2

      Conserved Domains (2) summary
      pfam04677
      Location:521 → 642
      CwfJ_C_1; Protein similar to CwfJ C-terminus 1
      pfam04676
      Location:651 → 748
      CwfJ_C_2; Protein similar to CwfJ C-terminus 2
    Nucleotide Protein
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