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    pan transcription factor pangolin [ Drosophila santomea ]

    Gene ID: 120454932, updated on 16-Oct-2024

    Summary

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    Gene symbol
    pan
    Gene description
    transcription factor pangolin
    See related
    EnsemblRapid:LOC120454932
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila santomea
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Orthologs
    fruit fly all
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    Genomic context

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    See pan in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    101 current Prin_Dsan_1.1 (GCF_016746245.2) 4 NC_053020.2 (58648..92067)
    100 previous assembly Prin_Dsan_1.0 (GCF_016746245.1) 4 NC_053020.1 (58644..92055)

    Chromosome 4 - NC_053020.2Genomic Context describing neighboring genes Neighboring gene transcriptional activator cubitus interruptus Neighboring gene ribosomal protein S3A Neighboring gene ankyrin-3 Neighboring gene uncharacterized LOC122756534

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in canonical Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of beta-catenin-TCF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein pangolin; protein pangolin, isoforms A/H/I/S

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila santomea Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Prin_Dsan_1.1

    Genomic

    1. NC_053020.2 Reference Prin_Dsan_1.1

      Range
      58648..92067
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039640696.2 → XP_039496630.1  protein pangolin, isoforms A/H/I/S isoform X6

      Related
      XP_039496630.1, XM_039640696.2
      Conserved Domains (1) summary
      cd01388
      Location:272 → 343
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

    2. XM_039640697.2 → XP_039496631.1  protein pangolin, isoforms A/H/I/S isoform X7

      Related
      XP_039496631.1, XM_039640697.2
      Conserved Domains (1) summary
      cd01388
      Location:272 → 343
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

    3. XM_039640694.2 → XP_039496628.1  protein pangolin, isoforms A/H/I/S isoform X5

      Related
      XP_039496628.1, XM_039640694.2
      Conserved Domains (1) summary
      cd01388
      Location:272 → 343
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

    4. XM_039640695.2 → XP_039496629.1  protein pangolin, isoforms A/H/I/S isoform X5

      Related
      XP_039496629.1, XM_039640695.2
      Conserved Domains (1) summary
      cd01388
      Location:272 → 343
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

    5. XM_039640692.2 → XP_039496626.1  protein pangolin isoform X4

      Related
      XP_039496626.1, XM_039640692.2
      Conserved Domains (1) summary
      cd01388
      Location:715 → 786
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

    6. XM_039640689.2 → XP_039496623.1  protein pangolin isoform X1

      Related
      XP_039496623.1, XM_039640689.2
      Conserved Domains (1) summary
      cd01388
      Location:715 → 786
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

    7. XM_039640691.2 → XP_039496625.1  protein pangolin isoform X3

      Related
      XP_039496625.1, XM_039640691.2
      Conserved Domains (1) summary
      cd01388
      Location:715 → 786
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

    8. XM_039640690.2 → XP_039496624.1  protein pangolin isoform X2

      Related
      XP_039496624.1, XM_039640690.2
      Conserved Domains (1) summary
      cd01388
      Location:715 → 786
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

    9. XM_039640699.1 → XP_039496633.1  protein pangolin, isoforms A/H/I/S isoform X8

      Related
      XP_039496633.1, XM_039640699.1

    RNA

    1. XR_006356520.1 RNA Sequence

      Related
      XR_006356520.1

    2. XR_005616700.2 RNA Sequence

      Related
      XR_005616700.2

    3. XR_005616701.2 RNA Sequence

      Related
      XR_005616701.2
    Nucleotide Protein Strain
    Heading Accession and Version

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