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    LOC116923537 TRAF3-interacting protein 1 [ Daphnia magna ]

    Gene ID: 116923537, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC116923537
    Gene description
    TRAF3-interacting protein 1
    See related
    EnsemblRapid:LOC116923537
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Daphnia magna
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia
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    Genomic context

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    See LOC116923537 in Genome Data Viewer
    Location:
    chromosome: LG5
    Exon count:
    10
    Annotation release Status Assembly LG Location
    101 current ASM2063170v1.1 (GCF_020631705.1) LG5 NC_059186.1 (6842647..6846146)
    100 previous assembly ASM399081v1 (GCF_003990815.1) LG5 NC_046178.1 (2050910..2053804, complement)

    Linkage Group LG5 - NC_059186.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123472200 Neighboring gene uncharacterized LOC116923344 Neighboring gene solute carrier family 25 member 40 Neighboring gene uncharacterized LOC116923540 Neighboring gene uncharacterized LOC116923556

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intraciliary transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of microtubule cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axoneme IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ciliary basal body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of intraciliary transport particle B IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TRAF3-interacting protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Daphnia magna Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2063170v1.1 Primary Assembly

    Genomic

    1. NC_059186.1 Reference ASM2063170v1.1 Primary Assembly

      Range
      6842647..6846146
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032930031.2 → XP_032785922.2  TRAF3-interacting protein 1

      UniProtKB/TrEMBL
      A0A0P5AA23
      Related
      XP_032785922.2, XM_032930031.2
    Nucleotide Protein
    Heading Accession and Version

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