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    LINC02806 long intergenic non-protein coding RNA 2806 [ Homo sapiens (human) ]

    Gene ID: 284561, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC02806provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2806provided by HGNC
    Primary source
    HGNC:HGNC:27628
    See related
    AllianceGenome:HGNC:27628
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02806 in Genome Data Viewer
    Location:
    1q21.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (148279268..148291861)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (146515514..146528098, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (147751386..147763967)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:147735767-147736426 Neighboring gene Sharpr-MPRA regulatory region 3868 Neighboring gene RNA, variant U1 small nuclear 22 Neighboring gene tRNA-Gln (anticodon CTG) 4-1 Neighboring gene long intergenic non-protein coding RNA 1731 Neighboring gene tRNA-His (anticodon GTG) 1-3 Neighboring gene uncharacterized LOC105371225 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:147753452-147754308 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1639 Neighboring gene tRNA-His (anticodon GTG) 1-4 Neighboring gene tRNA-Glu (anticodon TTC) 6-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_187238.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC239809, AC245100

    2. NR_187239.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC239809, AC245100

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      148279268..148291861
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      146515514..146528098 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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