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    Zfp955b zinc finger protein 955B [ Mus musculus (house mouse) ]

    Gene ID: 100043468, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Zfp955bprovided by MGI
    Official Full Name
    zinc finger protein 955Bprovided by MGI
    Primary source
    MGI:MGI:4834573
    See related
    Ensembl:ENSMUSG00000096910 AllianceGenome:MGI:4834573
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm4455; Zfp883b; A430003O12Rik; C430039G02Rik; C530035A18Rik
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in CNS E18 (RPKM 4.8), CNS E14 (RPKM 4.2) and 24 other tissues See more
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    Genomic context

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    See Zfp955b in Genome Data Viewer
    Location:
    17 B1; 17 17.98 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (33508495..33526213)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (33289521..33307239)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 955A Neighboring gene STARR-positive B cell enhancer mm9_chr17:33391968-33392269 Neighboring gene olfactory receptor family 10 subfamily H member 28 Neighboring gene STARR-positive B cell enhancer mm9_chr17:33426236-33426537 Neighboring gene zinc finger protein 422, pseudogene Neighboring gene zinc finger protein 81 Neighboring gene STARR-positive B cell enhancer mm9_chr17:33495732-33496033 Neighboring gene zinc finger protein 101

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
    2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    3. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 422, related sequence 1-like
    Names
    zinc finger protein 883B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001142957.1 → NP_001136429.1  zinc finger protein 422, related sequence 1-like

      Status: VALIDATED

      Source sequence(s)
      AK021244, CT033756, CT485619
      Consensus CDS
      CCDS50067.1
      UniProtKB/TrEMBL
      L7N232
      Related
      ENSMUSP00000097011.4, ENSMUST00000099414.5
      Conserved Domains (5) summary
      smart00349
      Location:10 → 50
      KRAB; krueppel associated box
      COG5048
      Location:402 → 544
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:376 → 396
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:10 → 49
      KRAB; KRAB box
      pfam13465
      Location:500 → 525
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      33508495..33526213
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030249402.1 → XP_030105262.1  zinc finger protein 422, related sequence 1-like isoform X2

      Conserved Domains (3) summary
      COG5048
      Location:317 → 460
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:376 → 396
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:9 → 50
      KRAB; KRAB box

    2. XM_030249401.1 → XP_030105261.1  zinc finger protein 422, related sequence 1-like isoform X1

      Conserved Domains (3) summary
      COG5048
      Location:370 → 512
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:344 → 364
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:9 → 50
      KRAB; KRAB box
    Nucleotide Protein Strain
    Heading Accession and Version

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