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    LCP1 lymphocyte cytosolic protein 1 [ Gallus gallus (chicken) ]

    Gene ID: 418852, updated on 10-Oct-2024

    Summary

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    Symbol
    LCP1provided by CGNC
    Full Name
    lymphocyte cytosolic protein 1provided by CGNC
    Primary source
    CGNC:12749
    See related
    Ensembl:ENSGALG00010003795
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    plastin-2
    Orthologs
    human mouse all
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    Genomic context

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    See LCP1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (167910600..167959913, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (167999905..168049214, complement)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH-type containing 13 Neighboring gene carboxypeptidase B2 Neighboring gene microRNA mir-12214 Neighboring gene uncharacterized LOC107051902 Neighboring gene rubicon like autophagy enhancer

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament bundle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in actin filament network formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in actin filament bundle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plastin-2
    Names
    lymphocyte cytosolic protein 1 (L-plastin)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008440.2 → NP_001008440.1  plastin-2

      See identical proteins and their annotated locations for NP_001008440.1

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000027
      UniProtKB/TrEMBL
      A0A1L1RYH3, A0A8V0XAJ8, F6RS71, Q5ZLW0
      Related
      ENSGALP00010005133.1, ENSGALT00010008780.1
      Conserved Domains (1) summary
      COG5069
      Location:7 → 617
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      167910600..167959913 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015275555.4 → XP_015131041.2  plastin-2 isoform X2

      UniProtKB/TrEMBL
      A0A1L1RYH3, A0A8V0XAJ8, F6RS71, Q5ZLW0
      Related
      ENSGALP00010005148.1, ENSGALT00010008801.1
      Conserved Domains (1) summary
      COG5069
      Location:7 → 617
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

    2. XM_040699784.2 → XP_040555718.1  plastin-2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XLN2
      Related
      ENSGALP00010005149.1, ENSGALT00010008803.1
      Conserved Domains (5) summary
      pfam13499
      Location:54 → 116
      EF-hand_7; EF-hand domain pair
      cd21292
      Location:135 → 279
      CH_PLS_rpt1; first calponin homology (CH) domain found in the plastin family
      cd21327
      Location:288 → 412
      CH_PLS2_rpt2; second calponin homology (CH) domain found in plastin-2
      cd21333
      Location:548 → 662
      CH_PLS2_rpt4; fourth calponin homology (CH) domain found in plastin-2
      cl00030
      Location:411 → 544
      CH_SF; calponin homology (CH) domain superfamily

    3. XM_015275546.4 → XP_015131032.2  plastin-2 isoform X2

      UniProtKB/TrEMBL
      A0A1L1RYH3, A0A8V0XAJ8, F6RS71, Q5ZLW0
      Conserved Domains (1) summary
      COG5069
      Location:7 → 617
      SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      167999905..168049214 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046908224.1 → XP_046764180.1  plastin-2 isoform X2

      UniProtKB/TrEMBL
      A0A1L1RYH3, F6RS71, Q5ZLW0

    2. XM_046908223.1 → XP_046764179.1  plastin-2 isoform X1

    3. XM_046908225.1 → XP_046764181.1  plastin-2 isoform X2

      UniProtKB/TrEMBL
      A0A1L1RYH3, F6RS71, Q5ZLW0
    Nucleotide Protein Strain
    Heading Accession and Version

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