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    OTUD7B OTU deubiquitinase 7B [ Gallus gallus (chicken) ]

    Gene ID: 426041, updated on 3-Dec-2024

    Summary

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    Symbol
    OTUD7Bprovided by CGNC
    Full Name
    OTU deubiquitinase 7Bprovided by CGNC
    Primary source
    CGNC:10051
    See related
    Ensembl:ENSGALG00010028750
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See OTUD7B in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 25 NC_052556.1 (631390..664793)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 25 NC_052597.1 (128776..162255, complement)

    Chromosome 25 - NC_052556.1Genomic Context describing neighboring genes Neighboring gene sperm-associated antigen 4 protein-like Neighboring gene sperm-associated antigen 4 protein-like Neighboring gene myotubularin related protein 11 Neighboring gene splicing factor 3b subunit 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables K63-linked polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein K11-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K48-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K63-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    OTU domain-containing protein 7B
    Names
    OTU domain containing 7B
    XP_040508413.1
    XP_040508414.1
    XP_040508415.1
    XP_040546581.1
    XP_040546583.1
    XP_046759908.1
    XP_046759909.1
    XP_046759910.1
    XP_046788650.1
    XP_046788651.1
    XP_046788652.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052556.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      631390..664793
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046903954.1 → XP_046759910.1  OTU domain-containing protein 7B

      UniProtKB/TrEMBL
      A0A8V1AA35, A0A8V1AHL3

    2. XM_040652480.2 → XP_040508414.1  OTU domain-containing protein 7B

      UniProtKB/TrEMBL
      A0A8V1AA35, A0A8V1AHL3
      Conserved Domains (2) summary
      smart00259
      Location:818 → 841
      ZnF_A20; A20-like zinc fingers
      cd14347
      Location:1 → 42
      UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins

    3. XM_046903952.1 → XP_046759908.1  OTU domain-containing protein 7B

      UniProtKB/TrEMBL
      A0A8V1AA35, A0A8V1AHL3

    4. XM_040652479.2 → XP_040508413.1  OTU domain-containing protein 7B

      UniProtKB/TrEMBL
      A0A8V1AA35, A0A8V1AHL3
      Related
      ENSGALP00010042832.1, ENSGALT00010069571.1
      Conserved Domains (2) summary
      smart00259
      Location:818 → 841
      ZnF_A20; A20-like zinc fingers
      cd14347
      Location:1 → 42
      UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins

    5. XM_040652481.2 → XP_040508415.1  OTU domain-containing protein 7B

      UniProtKB/TrEMBL
      A0A8V1AA35, A0A8V1AHL3
      Conserved Domains (2) summary
      smart00259
      Location:818 → 841
      ZnF_A20; A20-like zinc fingers
      cd14347
      Location:1 → 42
      UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins

    6. XM_046903953.1 → XP_046759909.1  OTU domain-containing protein 7B

      UniProtKB/TrEMBL
      A0A8V1AA35, A0A8V1AHL3

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052597.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      128776..162255 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040690647.2 → XP_040546581.1  OTU domain-containing protein 7B

      UniProtKB/TrEMBL
      A0A8V1AA35, A0A8V1AHL3
      Conserved Domains (2) summary
      smart00259
      Location:818 → 841
      ZnF_A20; A20-like zinc fingers
      cd14347
      Location:1 → 42
      UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins

    2. XM_046932694.1 → XP_046788650.1  OTU domain-containing protein 7B

      UniProtKB/TrEMBL
      A0A8V1AA35, A0A8V1AHL3

    3. XM_046932696.1 → XP_046788652.1  OTU domain-containing protein 7B

      UniProtKB/TrEMBL
      A0A8V1AA35, A0A8V1AHL3

    4. XM_046932695.1 → XP_046788651.1  OTU domain-containing protein 7B

      UniProtKB/TrEMBL
      A0A8V1AA35, A0A8V1AHL3

    5. XM_040690649.2 → XP_040546583.1  OTU domain-containing protein 7B

      UniProtKB/TrEMBL
      A0A8V1AA35, A0A8V1AHL3
      Conserved Domains (2) summary
      smart00259
      Location:818 → 841
      ZnF_A20; A20-like zinc fingers
      cd14347
      Location:1 → 42
      UBA_Cezanne_like; UBA-like domain found in OTU domain-containing proteins OTU7A, OTU7B and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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