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    PTBP1 polypyrimidine tract binding protein 1 [ Gallus gallus (chicken) ]

    Gene ID: 420098, updated on 17-Aug-2024

    Summary

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    Symbol
    PTBP1provided by CGNC
    Full Name
    polypyrimidine tract binding protein 1provided by CGNC
    Primary source
    CGNC:1388
    See related
    Ensembl:ENSGALG00010027419
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See PTBP1 in Genome Data Viewer
    Location:
    chromosome: 28
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 28 NC_052559.1 (3227981..3256653)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 28 NC_052600.1 (2794203..2822873)

    Chromosome 28 - NC_052559.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101750583 Neighboring gene mitotic spindle positioning Neighboring gene phospholipid phosphatase related 3 Neighboring gene complement factor D

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polypyrimidine tract-binding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030935.1 → NP_001026106.1  polypyrimidine tract-binding protein 1

      See identical proteins and their annotated locations for NP_001026106.1

      Status: PROVISIONAL

      Source sequence(s)
      AJ851444
      UniProtKB/TrEMBL
      Q5F456
      Conserved Domains (5) summary
      cd12693
      Location:151 → 246
      RRM2_PTBP1_like; RNA recognition motif 2 in polypyrimidine tract-binding protein 1 (PTB or hnRNP I) and similar proteins
      cd12695
      Location:333 → 425
      RRM3_PTBP1; RNA recognition motif 3 in vertebrate polypyrimidine tract-binding protein 1 (PTB)
      cd12701
      Location:450 → 525
      RRM4_PTBP1; RNA recognition motif 4 in vertebrate polypyrimidine tract-binding protein 1 (PTB)
      cd12777
      Location:29 → 109
      RRM1_PTBP1; RNA recognition motif 1 in vertebrate polypyrimidine tract-binding protein 1 (PTB)
      TIGR01649
      Location:27 → 526
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052559.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      3227981..3256653
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015299920.4 → XP_015155406.1  polypyrimidine tract-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V1ABY0
      Related
      ENSGALP00010040733.1, ENSGALT00010066482.1
      Conserved Domains (1) summary
      TIGR01649
      Location:57 → 560
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    2. XM_015299921.4 → XP_015155407.1  polypyrimidine tract-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A1L1S0D8
      Conserved Domains (1) summary
      TIGR01649
      Location:57 → 556
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    3. XM_015299922.4 → XP_015155408.1  polypyrimidine tract-binding protein 1 isoform X3

      Conserved Domains (1) summary
      TIGR01649
      Location:27 → 530
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    4. XM_046904578.1 → XP_046760534.1  polypyrimidine tract-binding protein 1 isoform X3

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052600.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      2794203..2822873
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046933776.1 → XP_046789732.1  polypyrimidine tract-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V1ABY0

    2. XM_046933777.1 → XP_046789733.1  polypyrimidine tract-binding protein 1 isoform X2

    3. XM_046933778.1 → XP_046789734.1  polypyrimidine tract-binding protein 1 isoform X3

    4. XM_046933779.1 → XP_046789735.1  polypyrimidine tract-binding protein 1 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version

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