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    LOC107052719 uncharacterized LOC107052719 [ Gallus gallus (chicken) ]

    Gene ID: 107052719, updated on 17-Aug-2024

    Summary

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    Symbol
    LOC107052719provided by CGNC
    Full Name
    uncharacterized LOC107052719provided by CGNC
    Primary source
    CGNC:75721
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    gag; SE21Q1b
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    Genomic context

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    See LOC107052719 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (23490305..23492936, complement)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121110790 Neighboring gene methylsterol monooxygenase 1 Neighboring gene carboxypeptidase E Neighboring gene serine/arginine repetitive matrix protein 3-like Neighboring gene tolloid like 1 Neighboring gene uncharacterized LOC121110793

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052535.1 Chromosome 4 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aspartic-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in viral process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC107052719
    Names
    envelope polyprotein
    gag and reverse transcriptase polyprotein
    gag polyprotein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      23490305..23492936 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015282677.4 → XP_015138163.2  uncharacterized protein LOC107052719

      UniProtKB/TrEMBL
      R4R7H0
      Conserved Domains (3) summary
      cd05482
      Location:574 → 661
      HIV_retropepsin_like; Retropepsins, pepsin-like aspartate proteases
      PTZ00368
      Location:466 → 531
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      pfam02813
      Location:2 → 87
      Retro_M; Retroviral M domain
    Nucleotide Protein Strain
    Heading Accession and Version

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