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    BBS5 Bardet-Biedl syndrome 5 [ Gallus gallus (chicken) ]

    Gene ID: 424165, updated on 20-Oct-2024

    Summary

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    Official Symbol
    BBS5provided by CGNC
    Official Full Name
    Bardet-Biedl syndrome 5provided by CGNC
    Primary source
    CGNC:7481
    See related
    Ensembl:ENSGALG00010023762
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See BBS5 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (18293406..18304307, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (18213281..18224180, complement)

    Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase G Neighboring gene FAST kinase domains 1 Neighboring gene kelch like family member 41 Neighboring gene uncharacterized LOC121113401 Neighboring gene collagen, type XXVIII, alpha 1-like Neighboring gene uncharacterized LOC121111329 Neighboring gene LDL receptor related protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol-3-phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of BBSome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ciliary basal body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BBSome complex member BBS5; Bardet-Biedl syndrome 5 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001252031.3 → NP_001238960.2  BBSome complex member BBS5

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000236
      Conserved Domains (1) summary
      smart00683
      Location:159 → 213
      DM16; Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      18293406..18304307 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040703442.2 → XP_040559376.1  Bardet-Biedl syndrome 5 protein isoform X8

      Conserved Domains (1) summary
      smart00683
      Location:29 → 83
      DM16; Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc

    2. XM_040703441.2 → XP_040559375.1  Bardet-Biedl syndrome 5 protein isoform X4

      Conserved Domains (1) summary
      smart00683
      Location:159 → 209
      DM16; Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc

    3. XM_046943601.1 → XP_046799557.1  Bardet-Biedl syndrome 5 protein isoform X7

    4. XM_025152193.3 → XP_025007961.2  Bardet-Biedl syndrome 5 protein isoform X5

      UniProtKB/TrEMBL
      A0A8V0ZWD2
      Related
      ENSGALP00010035174.1, ENSGALT00010057985.1
      Conserved Domains (1) summary
      smart00683
      Location:137 → 191
      DM16; Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc

    5. XM_046943599.1 → XP_046799555.1  Bardet-Biedl syndrome 5 protein isoform X5

      UniProtKB/TrEMBL
      A0A8V0ZWD2

    6. XM_046943597.1 → XP_046799553.1  Bardet-Biedl syndrome 5 protein isoform X3

    7. XM_046943596.1 → XP_046799552.1  Bardet-Biedl syndrome 5 protein isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZWA9
      Related
      ENSGALP00010035149.1, ENSGALT00010057946.1

    8. XM_025152192.3 → XP_025007960.2  Bardet-Biedl syndrome 5 protein isoform X1

      UniProtKB/TrEMBL
      A0A8V1A1S9
      Related
      ENSGALP00010035156.1, ENSGALT00010057958.1
      Conserved Domains (1) summary
      smart00683
      Location:195 → 249
      DM16; Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc

    9. XM_046943598.1 → XP_046799554.1  Bardet-Biedl syndrome 5 protein isoform X5

      UniProtKB/TrEMBL
      A0A8V0ZWD2

    10. XM_046943602.1 → XP_046799558.1  Bardet-Biedl syndrome 5 protein isoform X9

    11. XM_046943600.1 → XP_046799556.1  Bardet-Biedl syndrome 5 protein isoform X6

      UniProtKB/TrEMBL
      A0A8V0ZUB2
      Related
      ENSGALP00010035167.1, ENSGALT00010057976.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      18213281..18224180 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046921397.1 → XP_046777353.1  Bardet-Biedl syndrome 5 protein isoform X8

    2. XM_046921390.1 → XP_046777346.1  Bardet-Biedl syndrome 5 protein isoform X4

    3. XM_046921396.1 → XP_046777352.1  Bardet-Biedl syndrome 5 protein isoform X7

    4. XM_046921391.1 → XP_046777347.1  Bardet-Biedl syndrome 5 protein isoform X5

      UniProtKB/TrEMBL
      A0A8V0ZWD2

    5. XM_046921394.1 → XP_046777350.1  Bardet-Biedl syndrome 5 protein isoform X5

      UniProtKB/TrEMBL
      A0A8V0ZWD2

    6. XM_046921389.1 → XP_046777345.1  Bardet-Biedl syndrome 5 protein isoform X3

    7. XM_046921388.1 → XP_046777344.1  Bardet-Biedl syndrome 5 protein isoform X2

    8. XM_046921387.1 → XP_046777343.1  Bardet-Biedl syndrome 5 protein isoform X1

    9. XM_046921392.1 → XP_046777348.1  Bardet-Biedl syndrome 5 protein isoform X5

      UniProtKB/TrEMBL
      A0A8V0ZWD2

    10. XM_046921398.1 → XP_046777354.1  Bardet-Biedl syndrome 5 protein isoform X9

    11. XM_046921395.1 → XP_046777351.1  Bardet-Biedl syndrome 5 protein isoform X6

      UniProtKB/TrEMBL
      A0A8V0ZUB2
    Nucleotide Protein Strain
    Heading Accession and Version

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