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    CTDSPL CTD small phosphatase like [ Gallus gallus (chicken) ]

    Gene ID: 408252, updated on 3-Dec-2024

    Summary

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    Symbol
    CTDSPLprovided by CGNC
    Full Name
    CTD small phosphatase likeprovided by CGNC
    Primary source
    CGNC:49906
    See related
    Ensembl:ENSGALG00010026360
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    NIF; NFI1
    Orthologs
    human mouse all
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    Genomic context

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    See CTDSPL in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (4504837..4575936)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (4506500..4577993)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121109646 Neighboring gene uncharacterized LOC112531926 Neighboring gene microRNA 26a-1 Neighboring gene villin like Neighboring gene phospholipase C delta 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II CTD heptapeptide repeat phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CTD small phosphatase-like protein
    Names
    CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
    CTDSP-like
    NLI-interacting factor 1
    NLI/Ldb1/CLIM interacting factor
    nuclear LIM interactor-interacting factor 1
    small C-terminal domain phosphatase 3
    NP_001001316.1
    XP_015136538.1
    XP_025002847.1
    XP_040533112.1
    XP_040533113.1
    XP_040533114.1
    XP_046766521.1
    XP_046766522.1
    XP_046766523.1
    XP_046766524.1
    XP_046766525.1
    XP_046766526.1
    XP_046766527.1
    XP_046766528.1
    XP_046766529.1
    XP_046775507.1
    XP_046775515.1
    XP_046775518.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001316.2 → NP_001001316.1  CTD small phosphatase-like protein

      See identical proteins and their annotated locations for NP_001001316.1

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000035
      UniProtKB/Swiss-Prot
      Q9PTJ6, Q9PTJ7, Q9PTJ8, Q9PTJ9
      UniProtKB/TrEMBL
      A0A8V1AD90
      Related
      ENSGALP00010039467.1, ENSGALT00010064204.1
      Conserved Domains (1) summary
      TIGR02251
      Location:105 → 263
      HIF-SF_euk; Dullard-like phosphatase domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      4504837..4575936
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040677180.2 → XP_040533114.1  CTD small phosphatase-like protein isoform X2

      UniProtKB/TrEMBL
      A0A8V1AD90
      Conserved Domains (1) summary
      TIGR02251
      Location:105 → 263
      HIF-SF_euk; Dullard-like phosphatase domain

    2. XM_015281052.4 → XP_015136538.1  CTD small phosphatase-like protein isoform X4

      UniProtKB/TrEMBL
      A0A8V1AD90
      Related
      ENSGALP00010039471.1, ENSGALT00010064216.1
      Conserved Domains (1) summary
      TIGR02251
      Location:94 → 252
      HIF-SF_euk; Dullard-like phosphatase domain

    3. XM_025147079.3 → XP_025002847.1  CTD small phosphatase-like protein isoform X3

      UniProtKB/TrEMBL
      A0A8V1AD90
      Conserved Domains (1) summary
      TIGR02251
      Location:94 → 252
      HIF-SF_euk; Dullard-like phosphatase domain

    4. XM_040677178.2 → XP_040533112.1  CTD small phosphatase-like protein isoform X7

      UniProtKB/TrEMBL
      A0A8V1A5W1
      Related
      ENSGALP00010039463.1, ENSGALT00010064192.1
      Conserved Domains (1) summary
      TIGR02251
      Location:163 → 321
      HIF-SF_euk; Dullard-like phosphatase domain

    5. XM_040677179.2 → XP_040533113.1  CTD small phosphatase-like protein isoform X8

      Conserved Domains (1) summary
      TIGR02251
      Location:152 → 310
      HIF-SF_euk; Dullard-like phosphatase domain

    6. XM_046919551.1 → XP_046775507.1  CTD small phosphatase-like protein isoform X1

      UniProtKB/TrEMBL
      A0A8V1AD73
      Related
      ENSGALP00010039459.1, ENSGALT00010064183.1

    7. XM_046919559.1 → XP_046775515.1  CTD small phosphatase-like protein isoform X5

      UniProtKB/TrEMBL
      A0A8V1AB29, A0A8V1AD73
      Related
      ENSGALP00010039447.1, ENSGALT00010064160.1

    8. XM_046919562.1 → XP_046775518.1  CTD small phosphatase-like protein isoform X6

      UniProtKB/TrEMBL
      A0A8V1A0Q3
      Related
      ENSGALP00010039442.1, ENSGALT00010064148.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      4506500..4577993
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046910569.1 → XP_046766525.1  CTD small phosphatase-like protein isoform X9

      UniProtKB/Swiss-Prot
      Q9PTJ6, Q9PTJ7, Q9PTJ8, Q9PTJ9
      UniProtKB/TrEMBL
      A0A8V1AD90

    2. XM_046910567.1 → XP_046766523.1  CTD small phosphatase-like protein isoform X2

      UniProtKB/TrEMBL
      A0A8V1AD90

    3. XM_046910571.1 → XP_046766527.1  CTD small phosphatase-like protein isoform X4

      UniProtKB/TrEMBL
      A0A8V1AD90

    4. XM_046910566.1 → XP_046766522.1  CTD small phosphatase-like protein isoform X2

      UniProtKB/TrEMBL
      A0A8V1AD90

    5. XM_046910570.1 → XP_046766526.1  CTD small phosphatase-like protein isoform X4

      UniProtKB/TrEMBL
      A0A8V1AD90

    6. XM_046910568.1 → XP_046766524.1  CTD small phosphatase-like protein isoform X3

      UniProtKB/TrEMBL
      A0A8V1AD90

    7. XM_046910565.1 → XP_046766521.1  CTD small phosphatase-like protein isoform X1

      UniProtKB/TrEMBL
      A0A8V1AD73

    8. XM_046910572.1 → XP_046766528.1  CTD small phosphatase-like protein isoform X5

      UniProtKB/TrEMBL
      A0A8V1AB29, A0A8V1AD73

    9. XM_046910573.1 → XP_046766529.1  CTD small phosphatase-like protein isoform X6

      UniProtKB/TrEMBL
      A0A8V1A0Q3
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9PTJ6.2 GenPept UniProtKB/Swiss-Prot:Q9PTJ6

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