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    HIVEP1 human immunodeficiency virus type I enhancer binding protein 1 [ Gallus gallus (chicken) ]

    Gene ID: 420856, updated on 3-Dec-2024

    Summary

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    Symbol
    HIVEP1provided by CGNC
    Full Name
    human immunodeficiency virus type I enhancer binding protein 1provided by CGNC
    Primary source
    CGNC:51354
    See related
    Ensembl:ENSGALG00010010604
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See HIVEP1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (62436961..62556035, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (62385662..62504662, complement)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112531759 Neighboring gene uncharacterized LOC112531758 Neighboring gene uncharacterized LOC112531761 Neighboring gene endothelin 1 Neighboring gene androgen dependent TFPI regulating protein Neighboring gene uncharacterized LOC107051667 Neighboring gene transmembrane protein 170B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Conservation of mouse alpha A-crystallin promoter activity in chicken lens epithelial cells. Donovan DM, et al. J Mol Evol, 1992 Oct. PMID 1404419
    2. Regulation of the mouse alpha A-crystallin gene: isolation of a cDNA encoding a protein that binds to a cis sequence motif shared with the major histocompatibility complex class I gene and other genes. Nakamura T, et al. Mol Cell Biol, 1990 Jul. PMID 1694016, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein 40
    Names
    chicken alphaA-CRYBP1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      62436961..62556035 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025147651.3 → XP_025003419.2  zinc finger protein 40 isoform X5

      UniProtKB/TrEMBL
      A0A8V0Y158
      Related
      ENSGALP00010014304.1, ENSGALT00010025248.1
      Conserved Domains (3) summary
      smart00355
      Location:2101 → 2122
      ZnF_C2H2; zinc finger
      sd00017
      Location:409 → 429
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:2075 → 2095
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_004939652.5 → XP_004939709.2  zinc finger protein 40 isoform X5

      UniProtKB/TrEMBL
      A0A8V0Y158
      Conserved Domains (3) summary
      smart00355
      Location:2101 → 2122
      ZnF_C2H2; zinc finger
      sd00017
      Location:409 → 429
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:2075 → 2095
      ZF_C2H2; C2H2 Zn finger [structural motif]

    3. XM_015275980.4 → XP_015131466.2  zinc finger protein 40 isoform X5

      UniProtKB/TrEMBL
      A0A8V0Y158
      Related
      ENSGALP00010014300.1, ENSGALT00010025235.1
      Conserved Domains (3) summary
      smart00355
      Location:2101 → 2122
      ZnF_C2H2; zinc finger
      sd00017
      Location:409 → 429
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:2075 → 2095
      ZF_C2H2; C2H2 Zn finger [structural motif]

    4. XM_046932717.1 → XP_046788673.1  zinc finger protein 40 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Y158

    5. XM_046932711.1 → XP_046788667.1  zinc finger protein 40 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Y158

    6. XM_046932702.1 → XP_046788658.1  zinc finger protein 40 isoform X4

      UniProtKB/TrEMBL
      A0A8V0Y158

    7. XM_040695437.1 → XP_040551371.1  zinc finger protein 40 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y158
      Conserved Domains (3) summary
      smart00355
      Location:2272 → 2293
      ZnF_C2H2; zinc finger
      sd00017
      Location:580 → 600
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:2246 → 2266
      ZF_C2H2; C2H2 Zn finger [structural motif]

    8. XM_040695436.1 → XP_040551370.1  zinc finger protein 40 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y158
      Conserved Domains (3) summary
      smart00355
      Location:2272 → 2293
      ZnF_C2H2; zinc finger
      sd00017
      Location:580 → 600
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:2246 → 2266
      ZF_C2H2; C2H2 Zn finger [structural motif]

    9. XM_046932726.1 → XP_046788682.1  zinc finger protein 40 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Y158

    10. XM_046932727.1 → XP_046788683.1  zinc finger protein 40 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Y158

    11. XM_025147654.3 → XP_025003422.2  zinc finger protein 40 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Y158
      Conserved Domains (3) summary
      smart00355
      Location:1971 → 1992
      ZnF_C2H2; zinc finger
      sd00017
      Location:279 → 299
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:1945 → 1965
      ZF_C2H2; C2H2 Zn finger [structural motif]

    12. XM_004939653.4 → XP_004939710.3  zinc finger protein 40 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YEB0
      Related
      ENSGALP00010014306.1, ENSGALT00010025253.1
      Conserved Domains (3) summary
      smart00355
      Location:2272 → 2293
      ZnF_C2H2; zinc finger
      sd00017
      Location:580 → 600
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:2246 → 2266
      ZF_C2H2; C2H2 Zn finger [structural motif]

    13. XM_046932729.1 → XP_046788685.1  zinc finger protein 40 isoform X7

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      62385662..62504662 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040663168.2 → XP_040519102.1  zinc finger protein 40 isoform X5

      UniProtKB/TrEMBL
      A0A8V0Y158
      Conserved Domains (3) summary
      smart00355
      Location:2101 → 2122
      ZnF_C2H2; zinc finger
      sd00017
      Location:409 → 429
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:2075 → 2095
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_040663167.2 → XP_040519101.1  zinc finger protein 40 isoform X5

      UniProtKB/TrEMBL
      A0A8V0Y158
      Conserved Domains (3) summary
      smart00355
      Location:2101 → 2122
      ZnF_C2H2; zinc finger
      sd00017
      Location:409 → 429
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:2075 → 2095
      ZF_C2H2; C2H2 Zn finger [structural motif]

    3. XM_040663166.2 → XP_040519100.1  zinc finger protein 40 isoform X5

      UniProtKB/TrEMBL
      A0A8V0Y158
      Conserved Domains (3) summary
      smart00355
      Location:2101 → 2122
      ZnF_C2H2; zinc finger
      sd00017
      Location:409 → 429
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:2075 → 2095
      ZF_C2H2; C2H2 Zn finger [structural motif]

    4. XM_046912056.1 → XP_046768012.1  zinc finger protein 40 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Y158

    5. XM_046912055.1 → XP_046768011.1  zinc finger protein 40 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Y158

    6. XM_046912054.1 → XP_046768010.1  zinc finger protein 40 isoform X4

      UniProtKB/TrEMBL
      A0A8V0Y158

    7. XM_040663165.2 → XP_040519099.1  zinc finger protein 40 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y158
      Conserved Domains (3) summary
      smart00355
      Location:2272 → 2293
      ZnF_C2H2; zinc finger
      sd00017
      Location:580 → 600
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:2246 → 2266
      ZF_C2H2; C2H2 Zn finger [structural motif]

    8. XM_040663163.2 → XP_040519097.1  zinc finger protein 40 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y158
      Conserved Domains (3) summary
      smart00355
      Location:2272 → 2293
      ZnF_C2H2; zinc finger
      sd00017
      Location:580 → 600
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:2246 → 2266
      ZF_C2H2; C2H2 Zn finger [structural motif]

    9. XM_046912057.1 → XP_046768013.1  zinc finger protein 40 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Y158

    10. XM_046912058.1 → XP_046768014.1  zinc finger protein 40 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Y158

    11. XM_040663170.2 → XP_040519104.1  zinc finger protein 40 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Y158
      Conserved Domains (3) summary
      smart00355
      Location:1971 → 1992
      ZnF_C2H2; zinc finger
      sd00017
      Location:279 → 299
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:1945 → 1965
      ZF_C2H2; C2H2 Zn finger [structural motif]

    12. XM_040663164.2 → XP_040519098.1  zinc finger protein 40 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YEB0
      Conserved Domains (3) summary
      smart00355
      Location:2272 → 2293
      ZnF_C2H2; zinc finger
      sd00017
      Location:580 → 600
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:2246 → 2266
      ZF_C2H2; C2H2 Zn finger [structural motif]

    13. XM_046912059.1 → XP_046768015.1  zinc finger protein 40 isoform X8

    Nucleotide Protein Strain
    Heading Accession and Version

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