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    LYST lysosomal trafficking regulator [ Gallus gallus (chicken) ]

    Gene ID: 421514, updated on 3-Dec-2024

    Summary

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    Symbol
    LYSTprovided by CGNC
    Full Name
    lysosomal trafficking regulatorprovided by CGNC
    Primary source
    CGNC:8350
    See related
    Ensembl:ENSGALG00010009357
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See LYST in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    59
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (37584208..37687999)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (37467618..37592022)

    Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 137B Neighboring gene nidogen 1 Neighboring gene uncharacterized LOC121110430 Neighboring gene G protein subunit gamma 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein kinase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein localization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysosomal-trafficking regulator

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      37584208..37687999
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046939483.1 → XP_046795439.1  lysosomal-trafficking regulator isoform X1

      UniProtKB/TrEMBL
      A0A8V0XX33, A0A8V0YA43
      Related
      ENSGALP00010012842.1, ENSGALT00010022323.1

    2. XM_046939484.1 → XP_046795440.1  lysosomal-trafficking regulator isoform X1

      UniProtKB/TrEMBL
      A0A8V0XX33, A0A8V0YA43

    3. XM_015284416.4 → XP_015139902.3  lysosomal-trafficking regulator isoform X1

      UniProtKB/TrEMBL
      A0A8V0XX33, A0A8V0YA43
      Conserved Domains (4) summary
      smart01026
      Location:3124 → 3414
      Beach; Beige/BEACH domain
      cd01201
      Location:3004 → 3109
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      sd00039
      Location:3520 → 3557
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:3521 → 3770
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    4. XM_040698264.2 → XP_040554198.1  lysosomal-trafficking regulator isoform X1

      UniProtKB/TrEMBL
      A0A8V0XX33, A0A8V0YA43
      Conserved Domains (4) summary
      smart01026
      Location:3124 → 3414
      Beach; Beige/BEACH domain
      cd01201
      Location:3004 → 3109
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      sd00039
      Location:3520 → 3557
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:3521 → 3770
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    5. XM_046939482.1 → XP_046795438.1  lysosomal-trafficking regulator isoform X1

      UniProtKB/TrEMBL
      A0A8V0XX33, A0A8V0YA43

    6. XM_040698265.2 → XP_040554199.1  lysosomal-trafficking regulator isoform X1

      UniProtKB/TrEMBL
      A0A8V0XX33, A0A8V0YA43
      Related
      ENSGALP00010012836.1, ENSGALT00010022316.1
      Conserved Domains (4) summary
      smart01026
      Location:3124 → 3414
      Beach; Beige/BEACH domain
      cd01201
      Location:3004 → 3109
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      sd00039
      Location:3520 → 3557
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:3521 → 3770
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    7. XM_046939485.1 → XP_046795441.1  lysosomal-trafficking regulator isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y3B5
      Related
      ENSGALP00010012828.1, ENSGALT00010022306.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      37467618..37592022
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046914883.1 → XP_046770839.1  lysosomal-trafficking regulator isoform X1

      UniProtKB/TrEMBL
      A0A8V0XX33

    2. XM_046914882.1 → XP_046770838.1  lysosomal-trafficking regulator isoform X1

      UniProtKB/TrEMBL
      A0A8V0XX33

    3. XM_040668501.2 → XP_040524435.1  lysosomal-trafficking regulator isoform X1

      UniProtKB/TrEMBL
      A0A8V0XX33
      Conserved Domains (4) summary
      smart01026
      Location:3124 → 3414
      Beach; Beige/BEACH domain
      cd01201
      Location:3004 → 3109
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      sd00039
      Location:3520 → 3557
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:3521 → 3770
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    4. XM_046914881.1 → XP_046770837.1  lysosomal-trafficking regulator isoform X1

      UniProtKB/TrEMBL
      A0A8V0XX33

    5. XM_040668502.2 → XP_040524436.1  lysosomal-trafficking regulator isoform X1

      UniProtKB/TrEMBL
      A0A8V0XX33
      Conserved Domains (4) summary
      smart01026
      Location:3124 → 3414
      Beach; Beige/BEACH domain
      cd01201
      Location:3004 → 3109
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      sd00039
      Location:3520 → 3557
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:3521 → 3770
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    6. XM_040668500.2 → XP_040524434.1  lysosomal-trafficking regulator isoform X1

      UniProtKB/TrEMBL
      A0A8V0XX33
      Conserved Domains (4) summary
      smart01026
      Location:3124 → 3414
      Beach; Beige/BEACH domain
      cd01201
      Location:3004 → 3109
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      sd00039
      Location:3520 → 3557
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:3521 → 3770
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    7. XM_040668504.2 → XP_040524438.1  lysosomal-trafficking regulator isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y3B5

    8. XM_040668503.2 → XP_040524437.1  lysosomal-trafficking regulator isoform X1

      UniProtKB/TrEMBL
      A0A8V0XX33
      Conserved Domains (4) summary
      smart01026
      Location:3124 → 3414
      Beach; Beige/BEACH domain
      cd01201
      Location:3004 → 3109
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      sd00039
      Location:3520 → 3557
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:3521 → 3770
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
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