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    NSG1 neuronal vesicle trafficking associated 1 [ Gallus gallus (chicken) ]

    Gene ID: 395251, updated on 17-Aug-2024

    Summary

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    Official Symbol
    NSG1provided by CGNC
    Official Full Name
    neuronal vesicle trafficking associated 1provided by CGNC
    Primary source
    CGNC:49231
    See related
    Ensembl:ENSGALG00010009216
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See NSG1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (78101275..78122147)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (78080257..78101203)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 128 Neighboring gene zinc finger and BTB domain containing 49 Neighboring gene Ly1 antibody reactive Neighboring gene syntaxin 18 Neighboring gene uncharacterized LOC112532372

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The distribution of neuron-specific gene family member 1 in brain and germ cells: Implications for the regulation of germ-line development by brain. Rengaraj D, et al. Dev Dyn, 2011 Apr. PMID 21404368
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Expression of NSG1 in two apparently unrelated cell types such as neurons and germ cells suggests NSG1 roles in neurons and germ-cells chemotaxis and endocytotic machinery.
      Title: The distribution of neuron-specific gene family member 1 in brain and germ cells: Implications for the regulation of germ-line development by brain.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin light chain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled dopamine receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in clathrin coat assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endosomal transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neuronal vesicle trafficking-associated protein 1
    Names
    LZ1
    Protein LZ1
    neuron specific gene family member 1
    neuron-specific protein family member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_204565.2 → NP_989896.1  neuronal vesicle trafficking-associated protein 1

      See identical proteins and their annotated locations for NP_989896.1

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000074
      UniProtKB/Swiss-Prot
      Q8QFP1
      Related
      ENSGALP00010012589.1, ENSGALT00010021977.1
      Conserved Domains (1) summary
      pfam06387
      Location:1 → 177
      Calcyon; D1 dopamine receptor-interacting protein (calcyon)

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      78101275..78122147
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040698688.2 → XP_040554622.1  neuronal vesicle trafficking-associated protein 1 isoform X1

      Conserved Domains (1) summary
      pfam06387
      Location:1 → 140
      Calcyon; D1 dopamine receptor-interacting protein (calcyon)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      78080257..78101203
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046915458.1 → XP_046771414.1  neuronal vesicle trafficking-associated protein 1 isoform X1

    2. XM_046915457.1 → XP_046771413.1  neuronal vesicle trafficking-associated protein 1 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8QFP1.1 GenPept UniProtKB/Swiss-Prot:Q8QFP1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials