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    TAPT1 transmembrane anterior posterior transformation 1 [ Gallus gallus (chicken) ]

    Gene ID: 422824, updated on 3-Dec-2024

    Summary

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    Symbol
    TAPT1provided by CGNC
    Full Name
    transmembrane anterior posterior transformation 1provided by CGNC
    Primary source
    CGNC:10770
    See related
    Ensembl:ENSGALG00010011116
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See TAPT1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (75974757..76013615)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (75952180..75991028)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene LIM domain binding 2 Neighboring gene uncharacterized LOC112532307 Neighboring gene uncharacterized LOC124417920 Neighboring gene uncharacterized LOC121110788 Neighboring gene prominin 1 Neighboring gene uncharacterized LOC107053291 Neighboring gene fibroblast growth factor binding protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene expression profiling of chicken primordial germ cell ESTs. Han JY, et al. BMC Genomics, 2006 Aug 30. PMID 16939661, Free PMC Article
    2. A large database of chicken bursal ESTs as a resource for the analysis of vertebrate gene function. Abdrakhmanov I, et al. Genome Res, 2000 Dec. PMID 11116100, Free PMC Article
    3. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550
    4. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
    5. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in maintenance of protein localization in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ciliary basal body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transmembrane anterior posterior transformation protein 1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001031161.4 → NP_001026332.3  transmembrane anterior posterior transformation protein 1 homolog

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000074
      UniProtKB/Swiss-Prot
      Q5ZLG8

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      75974757..76013615
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015285736.4 → XP_015141222.4  transmembrane anterior posterior transformation protein 1 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q5ZLG8
      UniProtKB/TrEMBL
      A0A8V0Y9S2
      Related
      ENSGALP00010015158.1, ENSGALT00010026595.1

    2. XM_015285737.4 → XP_015141223.1  transmembrane anterior posterior transformation protein 1 homolog isoform X2

      Conserved Domains (1) summary
      pfam05346
      Location:39 → 343
      DUF747; Eukaryotic membrane protein family

    3. XM_015285738.4 → XP_015141224.1  transmembrane anterior posterior transformation protein 1 homolog isoform X3

      Conserved Domains (1) summary
      pfam05346
      Location:31 → 335
      DUF747; Eukaryotic membrane protein family

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      75952180..75991028
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046916280.1 → XP_046772236.1  transmembrane anterior posterior transformation protein 1 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q5ZLG8
      UniProtKB/TrEMBL
      A0A8V0Y9S2

    2. XM_046916281.1 → XP_046772237.1  transmembrane anterior posterior transformation protein 1 homolog isoform X2

    3. XM_046916282.1 → XP_046772238.1  transmembrane anterior posterior transformation protein 1 homolog isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZLG8.2 GenPept UniProtKB/Swiss-Prot:Q5ZLG8

    Gene LinkOut

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