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    ERLIN1 ER lipid raft associated 1 [ Gallus gallus (chicken) ]

    Gene ID: 423670, updated on 3-Dec-2024

    Summary

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    Symbol
    ERLIN1provided by CGNC
    Full Name
    ER lipid raft associated 1provided by CGNC
    Primary source
    CGNC:52022
    See related
    Ensembl:ENSGALG00010019999
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    SPFH1; erlin-1
    Orthologs
    human mouse all
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    Genomic context

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    See ERLIN1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (10029761..10045978)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (9913649..9929866)

    Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene CWF19-like 1, cell cycle control (S. pombe) Neighboring gene small nucleolar RNA SNORA12 Neighboring gene component of inhibitor of nuclear factor kappa B kinase complex Neighboring gene ADAM metallopeptidase domain 8 Neighboring gene tubulin gamma complex associated protein 2 Neighboring gene zinc finger protein 511

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cholesterol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in SREBP signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    erlin-1
    Names
    SPFH domain family, member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001031223.3 → NP_001026394.3  erlin-1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000227
      UniProtKB/TrEMBL
      A0A8V0Z5H3
      Related
      ENSGALP00010028487.1, ENSGALT00010048313.1
      Conserved Domains (1) summary
      cd03406
      Location:20 → 310
      SPFH_like_u3; Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      10029761..10045978
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046942846.1 → XP_046798802.1  erlin-1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z5H3

    2. XM_046942847.1 → XP_046798803.1  erlin-1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z5H3

    3. XM_046942849.1 → XP_046798805.1  erlin-1 isoform X3

    4. XM_046942848.1 → XP_046798804.1  erlin-1 isoform X2

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      9913649..9929866
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046920133.1 → XP_046776089.1  erlin-1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z5H3

    2. XM_046920134.1 → XP_046776090.1  erlin-1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z5H3

    3. XM_046920136.1 → XP_046776092.1  erlin-1 isoform X3

    4. XM_046920135.1 → XP_046776091.1  erlin-1 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

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