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    LINC02391 long intergenic non-protein coding RNA 2391 [ Homo sapiens (human) ]

    Gene ID: 101930023, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC02391provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2391provided by HGNC
    Primary source
    HGNC:HGNC:53318
    See related
    Ensembl:ENSG00000277851 AllianceGenome:HGNC:53318
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02391 in Genome Data Viewer
    Location:
    12q22
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (92259263..92363832, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (92234076..92341352, complement)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1619 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6721 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6722 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6723 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:92538603-92539139 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6725 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6726 Neighboring gene BTG1 divergent transcript Neighboring gene ribosomal protein L21 pseudogene 106 Neighboring gene BTG anti-proliferation factor 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6727 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6729 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6728 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:92718856-92719356 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:92719357-92719857 Neighboring gene NANOG hESC enhancer GRCh37_chr12:92725117-92725618 Neighboring gene uncharacterized LOC105369902 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6730 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6731 Neighboring gene CRISPRi-validated cis-regulatory element chr12.2878 Neighboring gene uncharacterized LOC107984467 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6732 Neighboring gene CRISPRi-validated cis-regulatory element chr12.2880 Neighboring gene CRISPRi-validated cis-regulatory element chr12.2881 Neighboring gene CLLU1 antisense RNA 1 Neighboring gene chronic lymphocytic leukemia up-regulated 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      92259263..92363832 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007063404.1 RNA Sequence

      Related
      ENST00000847440.1

    2. XR_007063403.1 RNA Sequence

      Related
      ENST00000847444.1

    3. XR_945205.3 RNA Sequence

      Related
      ENST00000847455.1

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      92234076..92341352 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007082920.1 RNA Sequence

    2. XR_007082919.1 RNA Sequence

    3. XR_007082921.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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