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    LOC112268119 protein SPT2 homolog [ Homo sapiens (human) ]

    Gene ID: 112268119, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC112268119
    Gene description
    protein SPT2 homolog
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC112268119 in Genome Data Viewer
    Location:
    13q14.11
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (39601324..39608996)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (38819793..38827467)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene LHFPL tetraspan subfamily member 6 Neighboring gene small nucleolar RNA U13 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:40072380-40073024 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:40073025-40073669 Neighboring gene uncharacterized LOC105370170 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:40086605-40087104 Neighboring gene NANOG hESC enhancer GRCh37_chr13:40089286-40089967 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:40137620-40138120 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:40138121-40138621 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr13:40139174-40140373 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:40145310-40145877 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:40145878-40146444 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5277 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5278 Neighboring gene microRNA 4305 Neighboring gene component of oligomeric golgi complex 6 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:40341964-40342464 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:40342465-40342965 Neighboring gene RNY4 pseudogene 14

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    General protein information

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    Preferred Names
    protein SPT2 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      39601324..39608996
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035861111.2 → XP_035717004.1  protein SPT2 homolog

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      38819793..38827467
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047446221.1 → XP_047302177.1  protein SPT2 homolog

    Nucleotide Protein
    Heading Accession and Version

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