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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_012932.1 RefSeqGene
- Range
-
5060..59881
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001352825.2 → NP_001339754.1 pleckstrin homology domain-containing family M member 1 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks multiple 3' exons, compared to variant 1, and encodes a protein (isoform 2) with a shorter and novel C-terminus, compared to isoform 1.
- Source sequence(s)
-
AC091132, AK025379
- Consensus CDS
-
CCDS92344.1
- UniProtKB/TrEMBL
-
A0A8V8TPW0
- Related
- ENSP00000514814.1, ENST00000700125.1
- Conserved Domains (4) summary
-
- smart00233
Location:685 → 777
- PH; Pleckstrin homology domain
- cd13321
Location:499 → 629
- PH_PLEKHM1; Pleckstrin homology domain-containing family M member 1 Pleckstrin homology (PH) domain
- pfam02759
Location:49 → 180
- RUN; RUN domain
- pfam12287
Location:306 → 463
- Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
-
NM_014798.3 → NP_055613.1 pleckstrin homology domain-containing family M member 1 isoform 1
See identical proteins and their annotated locations for NP_055613.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes isoform 1.
- Source sequence(s)
-
BC064361, DB064851
- Consensus CDS
-
CCDS32671.1
- UniProtKB/Swiss-Prot
- Q6P2R5, Q8TEL9, Q9NPP5, Q9NYA0, Q9Y4G2
- UniProtKB/TrEMBL
-
B4DR59
- Related
- ENSP00000389913.3, ENST00000430334.8
- Conserved Domains (5) summary
-
- smart00233
Location:685 → 777
- PH; Pleckstrin homology domain
- cd13321
Location:499 → 629
- PH_PLEKHM1; Pleckstrin homology domain-containing family M member 1 Pleckstrin homology (PH) domain
- pfam02759
Location:49 → 182
- RUN; RUN domain
- pfam12287
Location:306 → 463
- Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
- pfam13901
Location:846 → 1048
- zf-RING_9; Putative zinc-RING and/or ribbon
RNA
-
NR_027774.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) is missing an exon in the 5' coding region compared to variant 1. This variant is represented as non-coding because the use of the translational start codon as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AK299116, BC064361, DB064851
- Related
-
ENST00000579197.5
-
NR_027782.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) is missing an exon in the 5' coding region compared to variant 1. This variant is represented as non-coding because the use of the translational start codon as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
BC053848, BC064361, DB064851
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000017.11 Reference GRCh38.p14 Primary Assembly
- Range
-
45434209..45490721 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047437188.1 → XP_047293144.1 pleckstrin homology domain-containing family M member 1 isoform X1
- UniProtKB/Swiss-Prot
- Q6P2R5, Q8TEL9, Q9NPP5, Q9NYA0, Q9Y4G2
- UniProtKB/TrEMBL
-
B4DR59
-
XM_017025452.2 → XP_016880941.1 pleckstrin homology domain-containing family M member 1 isoform X5
- UniProtKB/TrEMBL
-
B4DR59
-
XM_047437190.1 → XP_047293146.1 pleckstrin homology domain-containing family M member 1 isoform X4
- UniProtKB/TrEMBL
-
B4DR59
-
XM_017025451.2 → XP_016880940.1 pleckstrin homology domain-containing family M member 1 isoform X1
- UniProtKB/Swiss-Prot
- Q6P2R5, Q8TEL9, Q9NPP5, Q9NYA0, Q9Y4G2
- UniProtKB/TrEMBL
-
B4DR59
- Conserved Domains (5) summary
-
- smart00233
Location:685 → 777
- PH; Pleckstrin homology domain
- cd13321
Location:499 → 629
- PH_PLEKHM1; Pleckstrin homology domain-containing family M member 1 Pleckstrin homology (PH) domain
- pfam02759
Location:49 → 182
- RUN; RUN domain
- pfam12287
Location:306 → 463
- Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
- pfam13901
Location:846 → 1048
- zf-RING_9; Putative zinc-RING and/or ribbon
-
XM_011525525.1 → XP_011523827.1 pleckstrin homology domain-containing family M member 1 isoform X2
See identical proteins and their annotated locations for XP_011523827.1
- UniProtKB/TrEMBL
-
B4DR59
- Conserved Domains (5) summary
-
- smart00233
Location:634 → 726
- PH; Pleckstrin homology domain
- cd13321
Location:448 → 578
- PH_PLEKHM1; Pleckstrin homology domain-containing family M member 1 Pleckstrin homology (PH) domain
- pfam02759
Location:46 → 131
- RUN; RUN domain
- pfam12287
Location:255 → 412
- Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
- pfam13901
Location:795 → 997
- zf-RING_9; Putative zinc-RING and/or ribbon
-
XM_006722201.5 → XP_006722264.1 pleckstrin homology domain-containing family M member 1 isoform X7
See identical proteins and their annotated locations for XP_006722264.1
- UniProtKB/TrEMBL
-
B4DR59
- Conserved Domains (5) summary
-
- smart00233
Location:555 → 647
- PH; Pleckstrin homology domain
- cd13321
Location:369 → 499
- PH_PLEKHM1; Pleckstrin homology domain-containing family M member 1 Pleckstrin homology (PH) domain
- pfam12287
Location:176 → 333
- Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
- pfam13901
Location:716 → 918
- zf-RING_9; Putative zinc-RING and/or ribbon
- cl02689
Location:1 → 52
- RUN; RUN domain
-
XM_047437192.1 → XP_047293148.1 pleckstrin homology domain-containing family M member 1 isoform X7
- UniProtKB/TrEMBL
-
B4DR59
-
XM_011525528.3 → XP_011523830.1 pleckstrin homology domain-containing family M member 1 isoform X8
See identical proteins and their annotated locations for XP_011523830.1
- Conserved Domains (3) summary
-
- smart00233
Location:164 → 256
- PH; Pleckstrin homology domain
- pfam13901
Location:325 → 527
- zf-RING_9; Putative zinc-RING and/or ribbon
- cl17171
Location:4 → 108
- PH-like; Pleckstrin homology-like domain
-
XM_047437189.1 → XP_047293145.1 pleckstrin homology domain-containing family M member 1 isoform X3
- UniProtKB/TrEMBL
-
B4DR59
-
XM_047437191.1 → XP_047293147.1 pleckstrin homology domain-containing family M member 1 isoform X6
- UniProtKB/TrEMBL
-
B4DRX1
Reference GRCh38.p14 ALT_REF_LOCI_1
Genomic
-
NT_167251.2 Reference GRCh38.p14 ALT_REF_LOCI_1
- Range
-
124584..181162 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054328579.1 → XP_054184554.1 pleckstrin homology domain-containing family M member 1 isoform X1
- UniProtKB/Swiss-Prot
- Q6P2R5, Q8TEL9, Q9NPP5, Q9NYA0, Q9Y4G2
- UniProtKB/TrEMBL
-
B4DR59
-
XM_054328582.1 → XP_054184557.1 pleckstrin homology domain-containing family M member 1 isoform X5
- UniProtKB/TrEMBL
-
B4DR59
-
XM_054328580.1 → XP_054184555.1 pleckstrin homology domain-containing family M member 1 isoform X2
- UniProtKB/TrEMBL
-
B4DR59
-
XM_054328584.1 → XP_054184559.1 pleckstrin homology domain-containing family M member 1 isoform X7
- UniProtKB/TrEMBL
-
B4DR59
-
XM_054328585.1 → XP_054184560.1 pleckstrin homology domain-containing family M member 1 isoform X7
- UniProtKB/TrEMBL
-
B4DR59
-
XM_054328586.1 → XP_054184561.1 pleckstrin homology domain-containing family M member 1 isoform X8
-
XM_054328583.1 → XP_054184558.1 pleckstrin homology domain-containing family M member 1 isoform X6
- UniProtKB/TrEMBL
-
B4DRX1
-
XM_054328581.1 → XP_054184556.1 pleckstrin homology domain-containing family M member 1 isoform X3
- UniProtKB/TrEMBL
-
B4DR59
Reference GRCh38.p14 ALT_REF_LOCI_2
Genomic
-
NT_187663.1 Reference GRCh38.p14 ALT_REF_LOCI_2
- Range
-
124714..180876 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054330128.1 → XP_054186103.1 pleckstrin homology domain-containing family M member 1 isoform X1
- UniProtKB/Swiss-Prot
- Q6P2R5, Q8TEL9, Q9NPP5, Q9NYA0, Q9Y4G2
- UniProtKB/TrEMBL
-
B4DR59
-
XM_054330132.1 → XP_054186107.1 pleckstrin homology domain-containing family M member 1 isoform X5
- UniProtKB/TrEMBL
-
B4DR59
-
XM_054330129.1 → XP_054186104.1 pleckstrin homology domain-containing family M member 1 isoform X2
- UniProtKB/TrEMBL
-
B4DR59
-
XM_054330131.1 → XP_054186106.1 pleckstrin homology domain-containing family M member 1 isoform X4
- UniProtKB/TrEMBL
-
B4DR59
-
XM_054330134.1 → XP_054186109.1 pleckstrin homology domain-containing family M member 1 isoform X7
- UniProtKB/TrEMBL
-
B4DR59
-
XM_054330135.1 → XP_054186110.1 pleckstrin homology domain-containing family M member 1 isoform X7
- UniProtKB/TrEMBL
-
B4DR59
-
XM_054330136.1 → XP_054186111.1 pleckstrin homology domain-containing family M member 1 isoform X8
-
XM_054330133.1 → XP_054186108.1 pleckstrin homology domain-containing family M member 1 isoform X6
- UniProtKB/TrEMBL
-
B4DRX1
-
XM_054330130.1 → XP_054186105.1 pleckstrin homology domain-containing family M member 1 isoform X3
- UniProtKB/TrEMBL
-
B4DR59
Alternate T2T-CHM13v2.0
Genomic
-
NC_060941.1 Alternate T2T-CHM13v2.0
- Range
-
46286496..46344437 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054318026.1 → XP_054174001.1 pleckstrin homology domain-containing family M member 1 isoform X1
- UniProtKB/Swiss-Prot
- Q6P2R5, Q8TEL9, Q9NPP5, Q9NYA0, Q9Y4G2
- UniProtKB/TrEMBL
-
B4DR59
-
XM_054318030.1 → XP_054174005.1 pleckstrin homology domain-containing family M member 1 isoform X5
- UniProtKB/TrEMBL
-
B4DR59
-
XM_054318027.1 → XP_054174002.1 pleckstrin homology domain-containing family M member 1 isoform X2
- UniProtKB/TrEMBL
-
B4DR59
-
XM_054318029.1 → XP_054174004.1 pleckstrin homology domain-containing family M member 1 isoform X4
- UniProtKB/TrEMBL
-
B4DR59
-
XM_054318032.1 → XP_054174007.1 pleckstrin homology domain-containing family M member 1 isoform X7
- UniProtKB/TrEMBL
-
B4DR59
-
XM_054318033.1 → XP_054174008.1 pleckstrin homology domain-containing family M member 1 isoform X7
- UniProtKB/TrEMBL
-
B4DR59
-
XM_054318034.1 → XP_054174009.1 pleckstrin homology domain-containing family M member 1 isoform X8
-
XM_054318031.1 → XP_054174006.1 pleckstrin homology domain-containing family M member 1 isoform X6
- UniProtKB/TrEMBL
-
B4DRX1
-
XM_054318028.1 → XP_054174003.1 pleckstrin homology domain-containing family M member 1 isoform X3
- UniProtKB/TrEMBL
-
B4DR59
RNA
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XR_008484971.1 RNA Sequence