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    ZBTB7C zinc finger and BTB domain containing 7C [ Homo sapiens (human) ]

    Gene ID: 201501, updated on 27-Nov-2024

    Summary

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    Official Symbol
    ZBTB7Cprovided by HGNC
    Official Full Name
    zinc finger and BTB domain containing 7Cprovided by HGNC
    Primary source
    HGNC:HGNC:31700
    See related
    Ensembl:ENSG00000184828 MIM:616591; AllianceGenome:HGNC:31700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    APM1; APM-1; ZBTB36; ZNF857C
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of cell population proliferation. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in esophagus (RPKM 8.6), skin (RPKM 4.3) and 18 other tissues See more
    Orthologs
    mouse all
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    Genomic context

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    See ZBTB7C in Genome Data Viewer
    Location:
    18q21.1
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (48026672..48412585, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (48217704..48603693, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (45553043..45938956, complement)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904297 Neighboring gene uncharacterized LOC105372101 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:45494112-45494840 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:45499951-45500451 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr18:45529319-45530518 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:45534013-45534926 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:45580577-45581077 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr18:45605776-45606698 Neighboring gene Sharpr-MPRA regulatory region 9251 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:45654098-45654696 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:45665409-45665908 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9431 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:45698538-45699038 Neighboring gene ZBTB7C antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:45712074-45712592 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:45712593-45713110 Neighboring gene RNA, U6 small nuclear 708, pseudogene Neighboring gene ZBTB7C antisense RNA 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:45819913-45820696 Neighboring gene Sharpr-MPRA regulatory region 937 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:45822263-45823044 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr18:45844425-45844926 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:45861441-45861941 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:45860940-45861440 Neighboring gene uncharacterized LOC124904352 Neighboring gene uncharacterized LOC124904353 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:45934035-45934654 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:45934655-45935272 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9432 Neighboring gene Sharpr-MPRA regulatory region 5458 Neighboring gene RNA, 5S ribosomal pseudogene 456 Neighboring gene RNA polymerase III subunit G pseudogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Characterization of a novel human papillomavirus DNA in the cervical carcinoma cell line ME180. Reuter S, et al. J Virol, 1991 Oct. PMID 1716694, Free PMC Article
    2. The prognostic and immunological effects of ZBTB7C across cancers: friend or foe? Chen X, et al. Aging (Albany NY), 2021 May 4. PMID 33946045, Free PMC Article
    3. Identification of Novel Alzheimer's Disease Loci Using Sex-Specific Family-Based Association Analysis of Whole-Genome Sequence Data. Prokopenko D, et al. Sci Rep, 2020 Mar 19. PMID 32193444, Free PMC Article
    4. Kr-POK (ZBTB7c) regulates cancer cell proliferation through glutamine metabolism. Hur MW, et al. Biochim Biophys Acta Gene Regul Mech, 2017 Aug. PMID 28571744
    5. APM-1, a novel human gene, identified by aberrant co-transcription with papillomavirus oncogenes in a cervical carcinoma cell line, encodes a BTB/POZ-zinc finger protein with growth inhibitory activity. Reuter S, et al. EMBO J, 1998 Jan 2. PMID 9427755, Free PMC Article

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ZBTB7C m6A modification incurred by METTL3 aberration promotes osteosarcoma progression.
      Title: ZBTB7C m6A modification incurred by METTL3 aberration promotes osteosarcoma progression.
    2. The prognostic and immunological effects of ZBTB7C across cancers: friend or foe?
      Title: The prognostic and immunological effects of ZBTB7C across cancers: friend or foe?
    3. Identification of Novel Alzheimer's Disease Loci Using Sex-Specific Family-Based Association Analysis of Whole-Genome Sequence Data.
      Title: Identification of Novel Alzheimer's Disease Loci Using Sex-Specific Family-Based Association Analysis of Whole-Genome Sequence Data.
    4. Repression of Kr-POK inhibited tumor growth.
      Title: Kr-POK (ZBTB7c) regulates cancer cell proliferation through glutamine metabolism.
    5. ZBTB7C genetic variations were significant for susceptibility to ischemic injury in cerebral ischemia.
      Title: Integrative Mouse and Human Studies Implicate ANGPT1 and ZBTB7C as Susceptibility Genes to Ischemic Injury.
    6. our findings define KR-POK as a transcriptional repressor with a pro-oncogenic role that relies upon binding to p53 and inhibition of its transactivation function.
      Title: KR-POK interacts with p53 and represses its ability to activate transcription of p21WAF1/CDKN1A.
    7. Adm and APM-1 protect endothelium-dependent vascular relaxation in sepsis.
      Title: Adrenomedullin and adrenomedullin binding protein-1 protect endothelium-dependent vascular relaxation in sepsis.
    Submit: New GeneRIF Correction

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.
    EBI GWAS Catalog
    Genome-wide association study in Han Chinese identifies three novel loci for human height.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • FLJ37907

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in negative regulation of cell population proliferation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in positive regulation of fat cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger and BTB domain-containing protein 7C
    Names
    B230208J24Rik
    affected by papillomavirus DNA integration in ME180 cells protein 1
    zinc finger and BTB domain containing 36
    zinc finger and BTB domain-containing protein 36
    zinc finger protein 857C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001039360.3 → NP_001034449.1  zinc finger and BTB domain-containing protein 7C

      See identical proteins and their annotated locations for NP_001034449.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC105042, AM988836, CD366839, EF120357
      Consensus CDS
      CCDS32830.1
      UniProtKB/Swiss-Prot
      A1YPR0, O73453
      UniProtKB/TrEMBL
      B2RG49
      Related
      ENSP00000439781.1, ENST00000535628.6
      Conserved Domains (3) summary
      COG5189
      Location:380 → 468
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:394 → 414
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18328
      Location:9 → 128
      BTB_POZ_ZBTB7C_ZBTB36; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7C (ZBTB7C)

    2. NM_001318841.2 → NP_001305770.1  zinc finger and BTB domain-containing protein 7C

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC105042, AM988839, BM983365
      Consensus CDS
      CCDS32830.1
      UniProtKB/Swiss-Prot
      A1YPR0, O73453
      UniProtKB/TrEMBL
      B2RG49
      Related
      ENSP00000467877.1, ENST00000590800.6
      Conserved Domains (3) summary
      COG5189
      Location:380 → 468
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:394 → 414
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18328
      Location:9 → 128
      BTB_POZ_ZBTB7C_ZBTB36; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7C (ZBTB7C)

    3. NM_001371284.1 → NP_001358213.1  zinc finger and BTB domain-containing protein 7C

      Status: VALIDATED

      Source sequence(s)
      AC105042, AM988839, AM991966
      Consensus CDS
      CCDS32830.1
      UniProtKB/Swiss-Prot
      A1YPR0, O73453
      UniProtKB/TrEMBL
      B2RG49
      Conserved Domains (3) summary
      COG5189
      Location:380 → 468
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:394 → 414
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18328
      Location:9 → 128
      BTB_POZ_ZBTB7C_ZBTB36; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7C (ZBTB7C)

    4. NM_001371285.1 → NP_001358214.1  zinc finger and BTB domain-containing protein 7C

      Status: VALIDATED

      Source sequence(s)
      AC105042, AM988839, AM991284
      Consensus CDS
      CCDS32830.1
      UniProtKB/Swiss-Prot
      A1YPR0, O73453
      UniProtKB/TrEMBL
      B2RG49
      Related
      ENSP00000468782.1, ENST00000588982.5
      Conserved Domains (3) summary
      COG5189
      Location:380 → 468
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:394 → 414
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18328
      Location:9 → 128
      BTB_POZ_ZBTB7C_ZBTB36; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7C (ZBTB7C)

    5. NM_001371286.1 → NP_001358215.1  zinc finger and BTB domain-containing protein 7C

      Status: VALIDATED

      Source sequence(s)
      AC024288, AC105042, AM988839, AM991285
      Consensus CDS
      CCDS32830.1
      UniProtKB/Swiss-Prot
      A1YPR0, O73453
      UniProtKB/TrEMBL
      B2RG49
      Conserved Domains (3) summary
      COG5189
      Location:380 → 468
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:394 → 414
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18328
      Location:9 → 128
      BTB_POZ_ZBTB7C_ZBTB36; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7C (ZBTB7C)

    6. NM_001371287.1 → NP_001358216.1  zinc finger and BTB domain-containing protein 7C

      Status: VALIDATED

      Source sequence(s)
      AC024288, AC105042, AM988839, AM989328, AM991966
      Consensus CDS
      CCDS32830.1
      UniProtKB/Swiss-Prot
      A1YPR0, O73453
      UniProtKB/TrEMBL
      B2RG49
      Conserved Domains (3) summary
      COG5189
      Location:380 → 468
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:394 → 414
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18328
      Location:9 → 128
      BTB_POZ_ZBTB7C_ZBTB36; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7C (ZBTB7C)

    7. NM_001371288.1 → NP_001358217.1  zinc finger and BTB domain-containing protein 7C

      Status: VALIDATED

      Source sequence(s)
      AC091150, AC105042, AM988839, AM991277
      Consensus CDS
      CCDS32830.1
      UniProtKB/Swiss-Prot
      A1YPR0, O73453
      UniProtKB/TrEMBL
      B2RG49
      Conserved Domains (3) summary
      COG5189
      Location:380 → 468
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:394 → 414
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18328
      Location:9 → 128
      BTB_POZ_ZBTB7C_ZBTB36; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7C (ZBTB7C)

    8. NM_001371290.1 → NP_001358219.1  zinc finger and BTB domain-containing protein 7C

      Status: VALIDATED

      Source sequence(s)
      AC024288, AC105042, AM988839, AM989330, AM991970
      Consensus CDS
      CCDS32830.1
      UniProtKB/Swiss-Prot
      A1YPR0, O73453
      UniProtKB/TrEMBL
      B2RG49
      Conserved Domains (3) summary
      COG5189
      Location:380 → 468
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:394 → 414
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18328
      Location:9 → 128
      BTB_POZ_ZBTB7C_ZBTB36; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7C (ZBTB7C)

    9. NM_001371291.1 → NP_001358220.1  zinc finger and BTB domain-containing protein 7C

      Status: VALIDATED

      Source sequence(s)
      AC024288, AC105042, AM988839, AM989330, AM991969
      Consensus CDS
      CCDS32830.1
      UniProtKB/Swiss-Prot
      A1YPR0, O73453
      UniProtKB/TrEMBL
      B2RG49
      Conserved Domains (3) summary
      COG5189
      Location:380 → 468
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:394 → 414
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18328
      Location:9 → 128
      BTB_POZ_ZBTB7C_ZBTB36; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7C (ZBTB7C)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

      Range
      48026672..48412585 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047437347.1 → XP_047293303.1  zinc finger and BTB domain-containing protein 7C isoform X2

    2. XM_047437346.1 → XP_047293302.1  zinc finger and BTB domain-containing protein 7C isoform X2

    3. XM_047437345.1 → XP_047293301.1  zinc finger and BTB domain-containing protein 7C isoform X1

    4. XM_011525864.3 → XP_011524166.1  zinc finger and BTB domain-containing protein 7C isoform X2

      See identical proteins and their annotated locations for XP_011524166.1

      Conserved Domains (4) summary
      smart00225
      Location:44 → 137
      BTB; Broad-Complex, Tramtrack and Bric a brac
      sd00017
      Location:403 → 423
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:33 → 136
      BTB; BTB/POZ domain
      pfam13465
      Location:443 → 468
      zf-H2C2_2; Zinc-finger double domain

    5. XM_047437348.1 → XP_047293304.1  zinc finger and BTB domain-containing protein 7C isoform X3

    6. XM_017025609.3 → XP_016881098.1  zinc finger and BTB domain-containing protein 7C isoform X4

      UniProtKB/Swiss-Prot
      A1YPR0, O73453
      UniProtKB/TrEMBL
      B2RG49
      Conserved Domains (3) summary
      COG5189
      Location:380 → 468
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:394 → 414
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18328
      Location:9 → 128
      BTB_POZ_ZBTB7C_ZBTB36; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7C (ZBTB7C)

    7. XM_011525865.4 → XP_011524167.1  zinc finger and BTB domain-containing protein 7C isoform X2

      See identical proteins and their annotated locations for XP_011524167.1

      Conserved Domains (4) summary
      smart00225
      Location:44 → 137
      BTB; Broad-Complex, Tramtrack and Bric a brac
      sd00017
      Location:403 → 423
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:33 → 136
      BTB; BTB/POZ domain
      pfam13465
      Location:443 → 468
      zf-H2C2_2; Zinc-finger double domain

    8. XM_017025606.3 → XP_016881095.1  zinc finger and BTB domain-containing protein 7C isoform X2

      Conserved Domains (4) summary
      smart00225
      Location:44 → 137
      BTB; Broad-Complex, Tramtrack and Bric a brac
      sd00017
      Location:403 → 423
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00651
      Location:33 → 136
      BTB; BTB/POZ domain
      pfam13465
      Location:443 → 468
      zf-H2C2_2; Zinc-finger double domain

    9. XM_047437344.1 → XP_047293300.1  zinc finger and BTB domain-containing protein 7C isoform X1

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060942.1 Alternate T2T-CHM13v2.0

      Range
      48217704..48603693 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054318277.1 → XP_054174252.1  zinc finger and BTB domain-containing protein 7C isoform X2

    2. XM_054318276.1 → XP_054174251.1  zinc finger and BTB domain-containing protein 7C isoform X2

    3. XM_054318274.1 → XP_054174249.1  zinc finger and BTB domain-containing protein 7C isoform X1

    4. XM_054318275.1 → XP_054174250.1  zinc finger and BTB domain-containing protein 7C isoform X2

    5. XM_054318280.1 → XP_054174255.1  zinc finger and BTB domain-containing protein 7C isoform X3

    6. XM_054318281.1 → XP_054174256.1  zinc finger and BTB domain-containing protein 7C isoform X4

      UniProtKB/Swiss-Prot
      A1YPR0, O73453
      UniProtKB/TrEMBL
      B2RG49

    7. XM_054318278.1 → XP_054174253.1  zinc finger and BTB domain-containing protein 7C isoform X2

    8. XM_054318279.1 → XP_054174254.1  zinc finger and BTB domain-containing protein 7C isoform X2

    9. XM_054318273.1 → XP_054174248.1  zinc finger and BTB domain-containing protein 7C isoform X1

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1YPR0.1 GenPept UniProtKB/Swiss-Prot:A1YPR0

    Gene LinkOut

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