U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC107985342 uncharacterized LOC107985342 [ Homo sapiens (human) ]

    Gene ID: 107985342, updated on 10-Dec-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC107985342
    Gene description
    uncharacterized LOC107985342
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC107985342 in Genome Data Viewer
    Location:
    19q13.42
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (53648048..53694622)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (56727585..56774140)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene divergent-paired related homeobox Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:54122202-54122702 Neighboring gene oligosaccharyltransferase complex subunit pseudogene 3 Neighboring gene RNA, 7SL, cytoplasmic 317, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:54140228-54140728 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:54146969-54147762 Neighboring gene RNA, U6 small nuclear 698, pseudogene Neighboring gene nuclear RNA export factor 3 pseudogene Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:54163595-54164484 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:54164485-54165374 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr19:54167967-54168856 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr19:54168857-54169744 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:54169745-54170633 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:54171522-54172410 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:54172411-54173298 Neighboring gene microRNA 512-1 Neighboring gene microRNA 512-2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:54180949-54181449 Neighboring gene microRNA 1323 Neighboring gene microRNA 498 Neighboring gene microRNA 520e Neighboring gene microRNA 515-1 Neighboring gene microRNA 519e Neighboring gene microRNA 520f Neighboring gene microRNA 515-2 Neighboring gene microRNA 1283-1 Neighboring gene microRNA 519c Neighboring gene microRNA 520a Neighboring gene microRNA 526b Neighboring gene microRNA 519b Neighboring gene microRNA 525

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See studies and variants in dbVar

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      53648048..53694622
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007067332.1 RNA Sequence

    2. XR_001753996.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      56727585..56774140
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_008485227.1 RNA Sequence

    2. XR_007089243.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases