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    LOC107986886 uncharacterized LOC107986886 [ Homo sapiens (human) ]

    Gene ID: 107986886, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC107986886
    Gene description
    uncharacterized LOC107986886
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC107986886 in Genome Data Viewer
    Location:
    8q12.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (55058356..55066180, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (55435902..55443726, complement)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene RP1 axonemal microtubule associated Neighboring gene Sharpr-MPRA regulatory region 1198 Neighboring gene RPL7L1 pseudogene 18 Neighboring gene uncharacterized LOC105375842 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:55787756-55788338 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:55795336-55796119 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:55809304-55810503 Neighboring gene MPRA-validated peak7023 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:55923506-55924006 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:55962859-55963358 Neighboring gene uncharacterized LOC107986887 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:55991285-55992111 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19200 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:56014243-56014910 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:56015579-56016244 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:56040789-56041681 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:56054033-56054534 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:56054535-56055034 Neighboring gene uncharacterized LOC105375844 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:56082878-56083063 Neighboring gene XK related 4 Neighboring gene Sharpr-MPRA regulatory region 131 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:56170973-56172172 Neighboring gene NANOG hESC enhancer GRCh37_chr8:56226088-56226589 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:56276417-56277111 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:56277806-56278500 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:56280453-56280954 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:56285036-56285662 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:56285663-56286288 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:56366282-56366665 Neighboring gene SET binding factor 1 pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      55058356..55066180 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001745709.1 RNA Sequence

    2. XR_001745711.1 RNA Sequence

    3. XR_001745710.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      55435902..55443726 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007078993.1 RNA Sequence

    2. XR_007078995.1 RNA Sequence

    3. XR_007078994.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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