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    LOC101930053 uncharacterized LOC101930053 [ Homo sapiens (human) ]

    Gene ID: 101930053, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC101930053
    Gene description
    uncharacterized LOC101930053
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in ovary (RPKM 2.2), fat (RPKM 0.4) and 5 other tissues See more
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    Genomic context

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    See LOC101930053 in Genome Data Viewer
    Location:
    9p24.2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (2385155..2506536, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (2387823..2509272, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107987043 Neighboring gene VISTA enhancer hs1743 Neighboring gene RNA, 7SL, cytoplasmic 592, pseudogene Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:2260567-2261766 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:2280415-2281039 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:2281040-2281664 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:2282916-2283540 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:2283541-2284165 Neighboring gene uncharacterized LOC105375955 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:2361801-2363000 Neighboring gene uncharacterized LOC105375956 Neighboring gene Sharpr-MPRA regulatory region 8982 Neighboring gene NANOG hESC enhancer GRCh37_chr9:2548993-2549494 Neighboring gene VLDLR antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28137 Neighboring gene Sharpr-MPRA regulatory region 6053 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19733 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19734 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19735 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19736 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19737 Neighboring gene uncharacterized LOC105375957 Neighboring gene very low density lipoprotein receptor Neighboring gene NANOG hESC enhancer GRCh37_chr9:2677398-2677906

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      2385155..2506536 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001746603.2 RNA Sequence

    2. XR_001746602.3 RNA Sequence

    3. XR_929431.2 RNA Sequence

    4. XR_929430.2 RNA Sequence

    5. XR_929429.2 RNA Sequence

    6. XR_428440.3 RNA Sequence

    7. XR_929428.2 RNA Sequence

    8. XR_001746604.2 RNA Sequence

    9. XR_007061396.1 RNA Sequence

    10. XR_007061397.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      2387823..2509272 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007079877.1 RNA Sequence

    2. XR_007079874.1 RNA Sequence

    3. XR_007079879.1 RNA Sequence

    4. XR_007079875.1 RNA Sequence

    5. XR_007079876.1 RNA Sequence

    6. XR_007079870.1 RNA Sequence

    7. XR_007079872.1 RNA Sequence

    8. XR_007079881.1 RNA Sequence

    9. XR_007079880.1 RNA Sequence

    10. XR_007079871.1 RNA Sequence

    11. XR_007079873.1 RNA Sequence

    12. XR_007079878.1 RNA Sequence

    Nucleotide Protein
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