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    CGL1 dubious cystathionine gamma-lyase [ Thalassiosira pseudonana CCMP1335 ]

    Gene ID: 7446872, updated on 21-Dec-2023

    Summary

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    Gene symbol
    CGL1
    Gene description
    dubious cystathionine gamma-lyase
    Locus tag
    THAPSDRAFT_269520
    Gene type
    protein coding
    RNA name
    dubious cystathionine gamma-lyase
    RefSeq status
    PROVISIONAL
    Organism
    Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
    Lineage
    Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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    Genomic context

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    See CGL1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Sequence:
    Chromosome: 10; NC_012073.1 (694559..696229)

    Chromosome 10 - NC_012073.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene FADH-2,4-dienoyl-CoA reductase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012073.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
    2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cystathionine gamma-lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cysteine biosynthetic process via cystathionine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transsulfuration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    dubious cystathionine gamma-lyase
    XP_002292684.1
    • One region of strong similarity, remainder is very dubious

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_012073.1 Reference assembly

      Range
      694559..696229
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002292648.1 → XP_002292684.1  dubious cystathionine gamma-lyase [Thalassiosira pseudonana CCMP1335]

      See identical proteins and their annotated locations for XP_002292684.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B8C9L7
      Conserved Domains (2) summary
      PRK08776
      Location:61 → 450
      PRK08776; cystathionine gamma-synthase; Provisional
      COG0626
      Location:61 → 451
      MetC; Cystathionine beta-lyase/cystathionine gamma-synthase [Amino acid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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