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    shi dynamin-1 shibire [ Athalia rosae (coleseed sawfly) ]

    Gene ID: 105683571, updated on 10-Oct-2024

    Summary

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    Gene symbol
    shi
    Gene description
    dynamin-1 shibire
    See related
    EnsemblRapid:ENSAEAG00005005566
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Athalia rosae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Tenthredinoidea; Athaliidae; Athalia
    Orthologs
    fruit fly honey bee all
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    Genomic context

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    See shi in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    103 current iyAthRosa1.1 (GCF_917208135.1) 2 NC_064027.1 (9540132..9566534)
    102 previous assembly Aros_2.0 (GCF_000344095.2) Unplaced Scaffold NW_020311975.1 (407718..433900)

    Chromosome 2 - NC_064027.1Genomic Context describing neighboring genes Neighboring gene Hormone receptor 4 Neighboring gene Protein phosphatase V Neighboring gene uncharacterized LOC125499962 Neighboring gene uncharacterized LOC125499961 Neighboring gene 1-Acylglycerol-3-phosphate O-acyltransferase 2 Neighboring gene uncharacterized LOC125499788 Neighboring gene 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha-like Neighboring gene uncharacterized LOC125499789

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in receptor-mediated endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dynamin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Athalia rosae Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference iyAthRosa1.1

    Genomic

    1. NC_064027.1 Reference iyAthRosa1.1

      Range
      9540132..9566534
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_048650532.1 → XP_048506489.1  dynamin isoform X1

    2. XM_048650537.1 → XP_048506494.1  dynamin isoform X8

    3. XM_048650534.1 → XP_048506491.1  dynamin isoform X3

    4. XM_048650535.1 → XP_048506492.1  dynamin isoform X4

    5. XM_012396258.3 → XP_012251681.1  dynamin isoform X6

      See identical proteins and their annotated locations for XP_012251681.1

      Related
      ENSAEAP00005005460.1, ENSAEAT00005010812.1
      Conserved Domains (6) summary
      smart00302
      Location:666 → 757
      GED; Dynamin GTPase effector domain
      smart00053
      Location:7 → 246
      DYNc; Dynamin, GTPase
      COG0699
      Location:79 → 498
      CrfC; Replication fork clamp-binding protein CrfC (dynamin-like GTPase family) [Replication, recombination and repair]
      cd01256
      Location:527 → 638
      PH_dynamin; Dynamin pleckstrin homology (PH) domain
      pfam00169
      Location:529 → 632
      PH; PH domain
      pfam01031
      Location:218 → 498
      Dynamin_M; Dynamin central region

    6. XM_012396278.3 → XP_012251701.1  dynamin isoform X7

      Related
      ENSAEAP00005005452.1, ENSAEAT00005010814.1
      Conserved Domains (6) summary
      smart00302
      Location:664 → 755
      GED; Dynamin GTPase effector domain
      smart00053
      Location:7 → 246
      DYNc; Dynamin, GTPase
      COG0699
      Location:79 → 498
      CrfC; Replication fork clamp-binding protein CrfC (dynamin-like GTPase family) [Replication, recombination and repair]
      cd01256
      Location:527 → 638
      PH_dynamin; Dynamin pleckstrin homology (PH) domain
      pfam00169
      Location:529 → 632
      PH; PH domain
      pfam01031
      Location:218 → 498
      Dynamin_M; Dynamin central region

    7. XM_048650540.1 → XP_048506497.1  dynamin isoform X13

      Related
      ENSAEAP00005005462.1, ENSAEAT00005010819.1

    8. XM_048650533.1 → XP_048506490.1  dynamin isoform X2

    9. XM_048650536.1 → XP_048506493.1  dynamin isoform X5

    10. XM_012396309.3 → XP_012251732.1  dynamin isoform X9

      Conserved Domains (6) summary
      smart00302
      Location:657 → 748
      GED; Dynamin GTPase effector domain
      smart00053
      Location:7 → 246
      DYNc; Dynamin, GTPase
      COG0699
      Location:79 → 504
      CrfC; Replication fork clamp-binding protein CrfC (dynamin-like GTPase family) [Replication, recombination and repair]
      cd01256
      Location:518 → 629
      PH_dynamin; Dynamin pleckstrin homology (PH) domain
      pfam00169
      Location:520 → 623
      PH; PH domain
      pfam01031
      Location:218 → 504
      Dynamin_M; Dynamin central region

    11. XM_048650539.1 → XP_048506496.1  dynamin isoform X11

    12. XM_048650538.1 → XP_048506495.1  dynamin isoform X10

      Related
      ENSAEAP00005005461.1, ENSAEAT00005010813.1

    13. XM_012396318.3 → XP_012251741.1  dynamin isoform X12

      Conserved Domains (6) summary
      smart00302
      Location:651 → 742
      GED; Dynamin GTPase effector domain
      smart00053
      Location:7 → 246
      DYNc; Dynamin, GTPase
      COG0699
      Location:79 → 504
      CrfC; Replication fork clamp-binding protein CrfC (dynamin-like GTPase family) [Replication, recombination and repair]
      cd01256
      Location:518 → 629
      PH_dynamin; Dynamin pleckstrin homology (PH) domain
      pfam00169
      Location:520 → 623
      PH; PH domain
      pfam01031
      Location:218 → 504
      Dynamin_M; Dynamin central region

    14. XM_048650541.1 → XP_048506498.1  dynamin isoform X14

      Related
      ENSAEAP00005005463.1, ENSAEAT00005010815.1
    Nucleotide Protein
    Heading Accession and Version

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