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    SCML4 Scm polycomb group protein like 4 [ Orcinus orca (killer whale) ]

    Gene ID: 101290178, updated on 8-Mar-2024

    Summary

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    Gene symbol
    SCML4
    Gene description
    Scm polycomb group protein like 4
    See related
    EnsemblRapid:ENSOORG00010004459
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Orcinus orca
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
    Orthologs
    human mouse all
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    Genomic context

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    See SCML4 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 12 NC_064570.1 (50711095..50818596)

    Chromosome 12 - NC_064570.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene osteoclastogenesis associated transmembrane protein 1 Neighboring gene 60S ribosomal protein L23a-like Neighboring gene SEC63 homolog, protein translocation regulator Neighboring gene U6 snRNA phosphodiesterase 1-like Neighboring gene sine oculis binding protein homolog Neighboring gene uncharacterized LOC117199377 Neighboring gene decaprenyl diphosphate synthase subunit 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064570.1 Chromosome 12 Reference mOrcOrc1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sex comb on midleg-like protein 4
    Names
    sex comb on midleg like 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mOrcOrc1.1 Primary Assembly

    Genomic

    1. NC_064570.1 Reference mOrcOrc1.1 Primary Assembly

      Range
      50711095..50818596
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_049695308.1 → XP_049551265.1  sex comb on midleg-like protein 4 isoform X4

    2. XM_033418724.2 → XP_033274615.1  sex comb on midleg-like protein 4 isoform X1

      Conserved Domains (4) summary
      cd09578
      Location:383 → 454
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      PHA03307
      Location:252 → 384
      PHA03307; transcriptional regulator ICP4; Provisional
      pfam12140
      Location:95 → 249
      SLED; SLED domain
      pfam17208
      Location:1 → 60
      RBR; RNA binding Region

    3. XM_033418725.2 → XP_033274616.1  sex comb on midleg-like protein 4 isoform X2

      Related
      ENSOORP00010005186.1, ENSOORT00010006429.1
      Conserved Domains (4) summary
      cd09578
      Location:339 → 410
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      pfam12140
      Location:95 → 205
      SLED; SLED domain
      pfam17208
      Location:1 → 60
      RBR; RNA binding Region
      cl11081
      Location:234 → 332
      dermokine

    4. XM_033418726.2 → XP_033274617.1  sex comb on midleg-like protein 4 isoform X3

      Conserved Domains (3) summary
      cd09578
      Location:325 → 396
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      PHA03307
      Location:194 → 326
      PHA03307; transcriptional regulator ICP4; Provisional
      pfam12140
      Location:37 → 191
      SLED; SLED domain

    5. XM_033418727.2 → XP_033274618.1  sex comb on midleg-like protein 4 isoform X5

      Conserved Domains (2) summary
      cd09578
      Location:97 → 168
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      PHA03307
      Location:2 → 98
      PHA03307; transcriptional regulator ICP4; Provisional

    RNA

    1. XR_007470521.1 RNA Sequence

    2. XR_004480600.2 RNA Sequence

    3. XR_007470520.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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