Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    Gfus GDP-L-fucose synthase [ Mus musculus (house mouse) ]

    Gene ID: 22122, updated on 9-Dec-2024

    Summary

    Official Symbol
    Gfusprovided by MGI
    Official Full Name
    GDP-L-fucose synthaseprovided by MGI
    Primary source
    MGI:MGI:98857
    See related
    Ensembl:ENSMUSG00000022570 AllianceGenome:MGI:98857
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    FX; Tsta3; Tstap35b
    Summary
    Enables GDP-L-fucose synthase activity and isomerase activity. Involved in 'de novo' GDP-L-fucose biosynthetic process. Acts upstream of or within T cell mediated cytotoxicity. Is active in cytosol. Orthologous to human GFUS (GDP-L-fucose synthase). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in colon adult (RPKM 74.6), large intestine adult (RPKM 59.5) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Gfus in Genome Data Viewer
    Location:
    15 D3; 15 35.1 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (75796532..75801613, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (75924669..75929821, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene tigger transposable element derived 5 Neighboring gene pyrroline-5-carboxylate reductase 3 Neighboring gene zinc finger protein 623 Neighboring gene STARR-seq mESC enhancer starr_39034 Neighboring gene predicted gene, 53898

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Gene trapped (1) 
    • Targeted (1)  1 citation

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC113801

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables GDP-L-fucose synthase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables GDP-L-fucose synthase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables GDP-L-fucose synthase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables GDP-L-fucose synthase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables GDP-mannose 3,5-epimerase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables isomerase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables isomerase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    GDP-L-fucose synthase
    Names
    GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
    GDP-L-fucose synthetase
    GDP-fucose synthase
    protein FX
    red cell NADP(H)-binding protein
    tissue specific transplantation antigen P35B
    transplantation antigen P35B
    tum-P35B antigen
    NP_001343934.1
    NP_001398744.1
    NP_001398745.1
    NP_112478.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001357005.2NP_001343934.1  GDP-L-fucose synthase isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC116520
      Consensus CDS
      CCDS27555.1
      UniProtKB/Swiss-Prot
      P23591
      UniProtKB/TrEMBL
      A0A2R8VHD0, Q5HZI6
      Related
      ENSMUSP00000155139.2, ENSMUST00000229641.2
      Conserved Domains (1) summary
      cd05239
      Location:9312
      GDP_FS_SDR_e; GDP-fucose synthetase, extended (e) SDRs
    2. NM_001411815.1NP_001398744.1  GDP-L-fucose synthase isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC116520
      UniProtKB/TrEMBL
      A0A2R8VI39, A0A2R8W6P6
    3. NM_001411816.1NP_001398745.1  GDP-L-fucose synthase isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC116520
      UniProtKB/TrEMBL
      A0A2R8VI39, A0A2R8W6P6
      Related
      ENSMUSP00000155711.2, ENSMUST00000229951.2
    4. NM_031201.2NP_112478.1  GDP-L-fucose synthase isoform 1

      See identical proteins and their annotated locations for NP_112478.1

      Status: VALIDATED

      Source sequence(s)
      AC116520
      Consensus CDS
      CCDS27555.1
      UniProtKB/Swiss-Prot
      P23591
      UniProtKB/TrEMBL
      A0A2R8VHD0, Q5HZI6
      Related
      ENSMUSP00000023231.6, ENSMUST00000023231.7
      Conserved Domains (1) summary
      cd05239
      Location:9312
      GDP_FS_SDR_e; GDP-fucose synthetase, extended (e) SDRs

    RNA

    1. NR_177931.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC116520
      Related
      ENSMUST00000229085.2
    2. NR_177932.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC116520
    3. NR_177933.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC116520
    4. NR_177934.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC116520
    5. NR_177935.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC116520
    6. NR_177936.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC116520
    7. NR_177937.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC116520
    8. NR_177938.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC116520
      Related
      ENSMUST00000230364.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      75796532..75801613 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)