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    CPD carboxypeptidase D [ Cygnus atratus (black swan) ]

    Gene ID: 118255079, updated on 20-Mar-2024

    Summary

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    Gene symbol
    CPD
    Gene description
    carboxypeptidase D
    See related
    EnsemblRapid:ENSACYG00000011822
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cygnus atratus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus
    Orthologs
    human mouse all
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    Genomic context

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    See CPD in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2023_02 current CAtr_DNAZoo_HiC_assembly (GCF_013377495.2) 20 NC_066381.1 (7401110..7432620)
    100 previous assembly Cygnus_atratus_primary_v1.0 (GCF_013377495.1) Unplaced Scaffold NW_023336651.1 (4672151..4702423, complement)

    Chromosome 20 - NC_066381.1Genomic Context describing neighboring genes Neighboring gene bleomycin hydrolase Neighboring gene transmembrane and immunoglobulin domain containing 1 Neighboring gene golgi SNAP receptor complex member 1 Neighboring gene trafficking regulator of GLUT4 (SLC2A4) 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metallocarboxypeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    carboxypeptidase D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_013377495.2-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

    Genomic

    1. NC_066381.1 Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

      Range
      7401110..7432620
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035561015.2 → XP_035416908.1  carboxypeptidase D isoform X3

      Related
      ENSACYP00000020269.1
      Conserved Domains (4) summary
      cd11308
      Location:574 → 649
      Peptidase_M14NE-CP-C_like; Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain
      cd03863
      Location:275 → 570
      M14_CPD_II; Peptidase M14 carboxypeptidase subfamily N/E-like; Carboxypeptidase D, domain II subgroup
      cd06245
      Location:706 → 989
      M14_CPD_III; Peptidase M14 carboxypeptidase subfamily N/E-like; Carboxypeptidase D, domain III subgroup
      cl11393
      Location:23 → 151
      Peptidase_M14_like; M14 family of metallocarboxypeptidases and related proteins

    2. XM_035561014.2 → XP_035416907.1  carboxypeptidase D isoform X2

      Conserved Domains (4) summary
      cd11308
      Location:598 → 673
      Peptidase_M14NE-CP-C_like; Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain
      cd03863
      Location:299 → 594
      M14_CPD_II; Peptidase M14 carboxypeptidase subfamily N/E-like; Carboxypeptidase D, domain II subgroup
      cd06245
      Location:730 → 1013
      M14_CPD_III; Peptidase M14 carboxypeptidase subfamily N/E-like; Carboxypeptidase D, domain III subgroup
      cl11393
      Location:47 → 175
      Peptidase_M14_like; M14 family of metallocarboxypeptidases and related proteins

    3. XM_035561013.1 → XP_035416906.1  carboxypeptidase D isoform X1

      Related
      ENSACYP00000020135.1, ENSACYT00000021909.1
      Conserved Domains (4) summary
      cd11308
      Location:789 → 864
      Peptidase_M14NE-CP-C_like; Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain
      cd03863
      Location:490 → 785
      M14_CPD_II; Peptidase M14 carboxypeptidase subfamily N/E-like; Carboxypeptidase D, domain II subgroup
      cd06245
      Location:921 → 1204
      M14_CPD_III; Peptidase M14 carboxypeptidase subfamily N/E-like; Carboxypeptidase D, domain III subgroup
      cl11393
      Location:48 → 366
      Peptidase_M14_like; M14 family of metallocarboxypeptidases and related proteins
    Nucleotide Protein
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