U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    BBOV_IV008240 putative small nuclear ribonucleoprotein Sm subunit [ Babesia bovis T2Bo ]

    Gene ID: 5478980, updated on 17-May-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    BBOV_IV008240
    Gene description
    putative small nuclear ribonucleoprotein Sm subunit
    Locus tag
    BBOV_IV008240
    See related
    PiroplasmaDB:BBOV_IV008240; VEuPathDB:BBOV_IV008240
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Babesia bovis T2Bo (strain: T2Bo)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Piroplasmida; Babesiidae; Babesia
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See BBOV_IV008240 in Genome Data Viewer
    Location:
    chromosome: 4, map: unlocalized
    Exon count:
    1

    NW_026261571.1Genomic Context describing neighboring genes Neighboring gene Phytanoyl-CoA dioxygenase (PhyH) family protein Neighboring gene DNA repair/transcription protein MET18/MMS19 domain protein Neighboring gene putative mitochondrial import inner membrane translocase subunit Tim17 Neighboring gene putative mitochondrial import inner membrane translocase subunit Tim17 Neighboring gene uncharacterized protein Neighboring gene putative co-chaperone GrpE

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_026261571.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Transcriptome dataset of Babesia bovis life stages within vertebrate and invertebrate hosts. Ueti MW, et al. Data Brief, 2020 Dec. PMID 33294524, Free PMC Article
    2. Comparative analysis of gene expression between Babesia bovis blood stages and kinetes allowed by improved genome annotation. Ueti MW, et al. Int J Parasitol, 2021 Feb. PMID 33069745
    3. Genome sequence of Babesia bovis and comparative analysis of apicomplexan hemoprotozoa. Brayton KA, et al. PLoS Pathog, 2007 Oct 19. PMID 17953480, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spliceosomal snRNP assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SMN-Sm protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U12-type spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U5 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of commitment complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of pICln-Sm protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of spliceosomal tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    putative small nuclear ribonucleoprotein Sm subunit

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_026261571.1 Reference assembly

      Range
      966913..967498 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001610696.2 → XP_001610746.1  putative small nuclear ribonucleoprotein Sm subunit [Babesia bovis T2Bo]

      See identical proteins and their annotated locations for XP_001610746.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A7ARK9
      Conserved Domains (1) summary
      cd01724
      Location:2 → 98
      Sm_D1; Sm protein D1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases