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    LOC7483974 actin [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7483974, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC7483974
    Gene description
    actin
    Locus tag
    POPTR_016G045500v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7483974 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 16 NC_037300.2 (2918861..2921673)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 16 NC_037300.1 (2874636..2877436)

    Chromosome 16 - NC_037300.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18106128 Neighboring gene uncharacterized LOC127904442 Neighboring gene probable protein phosphatase 2C 68 Neighboring gene uncharacterized LOC7468930

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. Ralph SG, et al. BMC Genomics, 2008 Jan 29. PMID 18230180, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    actin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037300.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      2918861..2921673
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002322628.4 → XP_002322664.1  actin

      See identical proteins and their annotated locations for XP_002322664.1

      UniProtKB/TrEMBL
      A0A2K2C6E2, A9P8T6
      Conserved Domains (1) summary
      cl17037
      Location:3 → 377
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

    2. XM_052447883.1 → XP_052303843.1  actin

      UniProtKB/TrEMBL
      A9P8T6

    3. XM_052447884.1 → XP_052303844.1  actin

      UniProtKB/TrEMBL
      A9P8T6
    Nucleotide Protein
    Heading Accession and Version

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