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    Hr39 nuclear hormone receptor FTZ-F1 beta [ Culex pipiens pallens (northern house mosquito) ]

    Gene ID: 120417376, updated on 15-May-2024

    Summary

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    Gene symbol
    Hr39
    Gene description
    nuclear hormone receptor FTZ-F1 beta
    See related
    EnsemblRapid:LOC120417376
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Culex pipiens pallens (sub-species: pallens)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex
    Orthologs
    fruit fly all
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    Genomic context

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    See Hr39 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2022_12 current TS_CPP_V2 (GCF_016801865.2) 2 NC_068938.1 (5141616..5181846)
    100 previous assembly TS_Cpip_V1 (GCF_016801865.1) Unplaced Scaffold NW_024109002.1 (1956972..1997196)

    Chromosome 2 - NC_068938.1Genomic Context describing neighboring genes Neighboring gene klarsicht protein Neighboring gene uncharacterized LOC128093094 Neighboring gene uncharacterized LOC120417501 Neighboring gene odorant receptor 43a-like Neighboring gene uncharacterized LOC120417832 Neighboring gene beta-1,4-glucuronyltransferase 1 Neighboring gene inactive tyrosine-protein kinase 7-like Neighboring gene uncharacterized LOC120417367

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in hormone-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tissue development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear hormone receptor FTZ-F1 beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_016801865.2-RS_2022_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference TS_CPP_V2 Primary Assembly

    Genomic

    1. NC_068938.1 Reference TS_CPP_V2 Primary Assembly

      Range
      5141616..5181846
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039579397.2 → XP_039435331.1  nuclear hormone receptor FTZ-F1 beta isoform X1

      UniProtKB/TrEMBL
      A0A8D8I3A8
      Related
      XP_039435331.1, XM_039579397.2

    2. XM_039579428.2 → XP_039435362.1  nuclear hormone receptor FTZ-F1 beta isoform X2

      UniProtKB/TrEMBL
      A0A8D8I3V5
      Related
      XP_039435362.1, XM_039579428.2

    3. XM_039579437.2 → XP_039435371.1  nuclear hormone receptor FTZ-F1 beta isoform X3

      UniProtKB/TrEMBL
      A0A8D8I3A8
      Related
      XP_039435371.1, XM_039579437.2

    4. XM_039579445.2 → XP_039435379.1  nuclear hormone receptor FTZ-F1 beta isoform X4

      UniProtKB/TrEMBL
      A0A8D8I3V5
      Related
      XP_039435379.1, XM_039579445.2

    5. XM_039579403.2 → XP_039435337.1  nuclear hormone receptor FTZ-F1 beta isoform X1

      UniProtKB/TrEMBL
      A0A8D8I3A8
      Related
      XP_039435337.1, XM_039579403.2

    6. XM_039579409.2 → XP_039435343.1  nuclear hormone receptor FTZ-F1 beta isoform X1

      UniProtKB/TrEMBL
      A0A8D8I3A8
      Related
      XP_039435343.1, XM_039579409.2

    7. XM_039579419.1 → XP_039435353.1  nuclear hormone receptor FTZ-F1 beta isoform X1

      UniProtKB/TrEMBL
      A0A8D8I3A8
      Related
      XP_039435353.1, XM_039579419.1
    Nucleotide Protein
    Heading Accession and Version

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