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    Zmym4 zinc finger MYM-type containing 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 313598, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Zmym4provided by RGD
    Official Full Name
    zinc finger MYM-type containing 4provided by RGD
    Primary source
    RGD:1309545
    See related
    EnsemblRapid:ENSRNOG00000012397 AllianceGenome:RGD:1309545
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Zfp262
    Summary
    Predicted to enable zinc ion binding activity. Predicted to be involved in cytoskeleton organization and regulation of cell morphogenesis. Orthologous to human ZMYM4 (zinc finger MYM-type containing 4). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 121.7), Brain (RPKM 103.6) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zmym4 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    35
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (144431255..144551747, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (139146782..139264387, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (144878212..144996431, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene KIAA0319 like Neighboring gene uncharacterized LOC134486992 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene ribosomal protein L35A, pseudogene 5 Neighboring gene uncharacterized LOC108351035 Neighboring gene tubulin, alpha 1B, pseudogene 13 Neighboring gene ribosomal protein S11, pseudogene 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of a set of conserved and new regulators of cytoskeletal organization, cell morphology and migration. Bai SW, et al. BMC Biol, 2011 Aug 11. PMID 21834987, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cytoskeleton organization ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in regulation of cell morphogenesis ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger MYM-type protein 4
    Names
    zinc finger protein 262
    zinc finger, MYM-type 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107982.2 → NP_001101452.2  zinc finger MYM-type protein 4 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A6ISB8

    2. NM_001415925.1 → NP_001402854.1  zinc finger MYM-type protein 4 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      D4A069
      Related
      ENSRNOP00000016992.7, ENSRNOT00000016992.7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      144431255..144551747 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039110031.2 → XP_038965959.1  zinc finger MYM-type protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A8I6G731
      Conserved Domains (3) summary
      smart00746
      Location:358 → 398
      TRASH; metallochaperone-like domain
      pfam06467
      Location:450 → 490
      zf-FCS; MYM-type Zinc finger with FCS sequence motif
      pfam12012
      Location:1327 → 1498
      DUF3504; Domain of unknown function (DUF3504)

    2. XM_063287760.1 → XP_063143830.1  zinc finger MYM-type protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A8I6AHT2, A6ISB8, D4A069
      Related
      ENSRNOP00000092252.1, ENSRNOT00000094161.2

    3. XM_063287761.1 → XP_063143831.1  zinc finger MYM-type protein 4 isoform X4

      UniProtKB/TrEMBL
      A0A8I6ART0, D4A069
      Related
      ENSRNOP00000091468.1, ENSRNOT00000100296.2

    4. XM_017593403.2 → XP_017448892.1  zinc finger MYM-type protein 4 isoform X1

      UniProtKB/TrEMBL
      D4A069
      Related
      ENSRNOP00000077242.2, ENSRNOT00000103036.2

    5. XM_039110028.1 → XP_038965956.1  zinc finger MYM-type protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A8I6G731
      Conserved Domains (3) summary
      smart00746
      Location:358 → 398
      TRASH; metallochaperone-like domain
      pfam06467
      Location:450 → 490
      zf-FCS; MYM-type Zinc finger with FCS sequence motif
      pfam12012
      Location:1327 → 1498
      DUF3504; Domain of unknown function (DUF3504)

    6. XM_039110032.2 → XP_038965960.1  zinc finger MYM-type protein 4 isoform X5

      UniProtKB/TrEMBL
      A0A8I6G731
      Conserved Domains (3) summary
      smart00746
      Location:65 → 105
      TRASH; metallochaperone-like domain
      pfam06467
      Location:157 → 197
      zf-FCS; MYM-type Zinc finger with FCS sequence motif
      pfam12012
      Location:1034 → 1205
      DUF3504; Domain of unknown function (DUF3504)

    7. XM_039110027.1 → XP_038965955.1  zinc finger MYM-type protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A8I6G731
      Conserved Domains (3) summary
      smart00746
      Location:358 → 398
      TRASH; metallochaperone-like domain
      pfam06467
      Location:450 → 490
      zf-FCS; MYM-type Zinc finger with FCS sequence motif
      pfam12012
      Location:1327 → 1498
      DUF3504; Domain of unknown function (DUF3504)

    8. XM_039110033.2 → XP_038965961.1  zinc finger MYM-type protein 4 isoform X7

      Conserved Domains (2) summary
      pfam06467
      Location:133 → 168
      zf-FCS; MYM-type Zinc finger with FCS sequence motif
      pfam12012
      Location:765 → 936
      DUF3504; Domain of unknown function (DUF3504)

    9. XM_063287762.1 → XP_063143832.1  zinc finger MYM-type protein 4 isoform X6

    10. XM_039110034.2 → XP_038965962.2  zinc finger MYM-type protein 4 isoform X8

    Nucleotide Protein Strain
    Heading Accession and Version

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