U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    CT70 cancer/testis associated transcript 70 [ Homo sapiens (human) ]

    Gene ID: 107987106, updated on 10-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CT70provided by HGNC
    Official Full Name
    cancer/testis associated transcript 70provided by HGNC
    Primary source
    HGNC:HGNC:37195
    See related
    Ensembl:ENSG00000230013 AllianceGenome:HGNC:37195
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LeXis
    Expression
    Restricted expression toward testis (RPKM 2.4) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CT70 in Genome Data Viewer
    Location:
    9q31.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (104973321..104991795, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (117148048..117166531, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (107735602..107754076, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ATP binding cassette subfamily A member 1 Neighboring gene uncharacterized LOC124902239 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20145 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20146 Neighboring gene uncharacterized LOC105376196 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28732 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28733 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20147 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28734 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28735 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:107753226-107754425 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:107755941-107756769 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:107814850-107816049 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:107832754-107833953 Neighboring gene uncharacterized LOC105376197 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:107875055-107875555 Neighboring gene RN7SK pseudogene 191 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:107899749-107900728 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:107900729-107901708 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:107901709-107902688 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:107902689-107903668 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20149 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28737 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:107935529-107936117 Neighboring gene uncharacterized LOC112268038 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:108006574-108007478 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:108007479-108008382 Neighboring gene solute carrier family 44 member 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Long noncoding RNA LeXis promotes osteosarcoma growth through upregulation of CTNNB1 expression. Wang G, et al. Am J Cancer Res, 2017. PMID 28744406, Free PMC Article
    2. Feedback modulation of cholesterol metabolism by the lipid-responsive non-coding RNA LeXis. Sallam T, et al. Nature, 2016 Jun 2. PMID 27251289, Free PMC Article
    3. Identification of cancer/testis-antigen genes by massively parallel signature sequencing. Chen YT, et al. Proc Natl Acad Sci U S A, 2005 May 31. PMID 15905330, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    General gene information

    Go to the top of the page Help

    Other Names

    • cancer/testis antigen 70

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_184156.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL359182

    2. NR_184157.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL359182

    3. NR_184158.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL359182

    4. NR_184159.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL359182
      Related
      ENST00000457720.1

    5. NR_184160.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL359182

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      104973321..104991795 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      117148048..117166531 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases