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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029794.2 RefSeqGene
- Range
-
10120..124937
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001009991.4 → NP_001009991.2 synaptotagmin-like protein 3 isoform 2
See identical proteins and their annotated locations for NP_001009991.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate splice site in the 5' UTR and lacks two in-frame coding exons compared to variant 1. This results in a shorter isoform (2) compared to isoform 1. Variants 3 and 4 encode the same isoform (2).
- Source sequence(s)
-
AI674404, AK304191, AL567177, BC085612, DC394549
- Consensus CDS
-
CCDS34563.1
- UniProtKB/TrEMBL
-
B4DQA6
- Conserved Domains (3) summary
-
- cd04020
Location:380 → 542
- C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
- cd08392
Location:239 → 366
- C2A_SLP-3; C2 domain first repeat present in Synaptotagmin-like protein 3
- cl22851
Location:60 → 108
- PHD_SF; PHD finger superfamily
-
NM_001242384.2 → NP_001229313.1 synaptotagmin-like protein 3 isoform 1
See identical proteins and their annotated locations for NP_001229313.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (1). Variants 1 and 2 encode the same isoform (1).
- Source sequence(s)
-
AI674404, AK304191, AL567177, BC100830, DC394549
- Consensus CDS
-
CCDS56458.1
- UniProtKB/Swiss-Prot
- Q496J4, Q496J6, Q4VX76, Q5U3B9
- UniProtKB/TrEMBL
-
B4DQA6
- Related
- ENSP00000353631.4, ENST00000360448.8
- Conserved Domains (4) summary
-
- cd04020
Location:448 → 610
- C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
- cd08392
Location:307 → 434
- C2A_SLP-3; C2 domain first repeat present in Synaptotagmin-like protein 3
- cd15765
Location:60 → 108
- FYVE_Slp3; FYVE-related domain found in synaptotagmin-like protein 3 (Slp3) and similar proteins
- cl22851
Location:8 → 123
- PHD_SF; PHD finger superfamily
-
NM_001242394.2 → NP_001229323.1 synaptotagmin-like protein 3 isoform 1
See identical proteins and their annotated locations for NP_001229323.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) contains an alternate segment in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same isoform (1).
- Source sequence(s)
-
AI674404, AK304191, AL567177, BC100829, DC394549
- Consensus CDS
-
CCDS56458.1
- UniProtKB/Swiss-Prot
- Q496J4, Q496J6, Q4VX76, Q5U3B9
- UniProtKB/TrEMBL
-
B4DQA6
- Related
- ENSP00000483936.1, ENST00000611299.5
- Conserved Domains (4) summary
-
- cd04020
Location:448 → 610
- C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
- cd08392
Location:307 → 434
- C2A_SLP-3; C2 domain first repeat present in Synaptotagmin-like protein 3
- cd15765
Location:60 → 108
- FYVE_Slp3; FYVE-related domain found in synaptotagmin-like protein 3 (Slp3) and similar proteins
- cl22851
Location:8 → 123
- PHD_SF; PHD finger superfamily
-
NM_001242395.2 → NP_001229324.1 synaptotagmin-like protein 3 isoform 2
See identical proteins and their annotated locations for NP_001229324.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) contains an alternate segment in the 5' UTR and lacks two in-frame coding exons compared to variant 1. This results in a shorter isoform (2) compared to isoform 1. Variants 3 and 4 encode the same isoform (2).
- Source sequence(s)
-
AI674404, AK304191, AL567177, BC100828, DC394549
- Consensus CDS
-
CCDS34563.1
- UniProtKB/TrEMBL
-
B4DQA6
- Related
- ENSP00000356048.4, ENST00000367081.7
- Conserved Domains (3) summary
-
- cd04020
Location:380 → 542
- C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
- cd08392
Location:239 → 366
- C2A_SLP-3; C2 domain first repeat present in Synaptotagmin-like protein 3
- cl22851
Location:60 → 108
- PHD_SF; PHD finger superfamily
-
NM_001318745.2 → NP_001305674.1 synaptotagmin-like protein 3 isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon compared to variant 1. The resulting isoform (3) has a shorter N-terminus than isoform 1.
- Source sequence(s)
-
AI674404, AK055750, AK304191, AL589931, BC085612
- UniProtKB/TrEMBL
-
B4E2A9
- Conserved Domains (2) summary
-
- cd04020
Location:242 → 404
- C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
- cd08392
Location:101 → 228
- C2A_SLP-3; C2 domain first repeat present in Synaptotagmin-like protein 3
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000006.12 Reference GRCh38.p14 Primary Assembly
- Range
-
158644936..158764871
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006715606.4 → XP_006715669.1 synaptotagmin-like protein 3 isoform X1
See identical proteins and their annotated locations for XP_006715669.1
- UniProtKB/Swiss-Prot
- Q496J4, Q496J6, Q4VX76, Q5U3B9
- UniProtKB/TrEMBL
-
B4DQA6
- Conserved Domains (4) summary
-
- cd04020
Location:448 → 610
- C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
- cd08392
Location:307 → 434
- C2A_SLP-3; C2 domain first repeat present in Synaptotagmin-like protein 3
- cd15765
Location:60 → 108
- FYVE_Slp3; FYVE-related domain found in synaptotagmin-like protein 3 (Slp3) and similar proteins
- cl22851
Location:8 → 123
- PHD_SF; PHD finger superfamily
-
XM_047419556.1 → XP_047275512.1 synaptotagmin-like protein 3 isoform X2
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_011536254.3 → XP_011534556.1 synaptotagmin-like protein 3 isoform X1
See identical proteins and their annotated locations for XP_011534556.1
- UniProtKB/Swiss-Prot
- Q496J4, Q496J6, Q4VX76, Q5U3B9
- UniProtKB/TrEMBL
-
B4DQA6
- Conserved Domains (4) summary
-
- cd04020
Location:448 → 610
- C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
- cd08392
Location:307 → 434
- C2A_SLP-3; C2 domain first repeat present in Synaptotagmin-like protein 3
- cd15765
Location:60 → 108
- FYVE_Slp3; FYVE-related domain found in synaptotagmin-like protein 3 (Slp3) and similar proteins
- cl22851
Location:8 → 123
- PHD_SF; PHD finger superfamily
-
XM_006715611.4 → XP_006715674.1 synaptotagmin-like protein 3 isoform X4
See identical proteins and their annotated locations for XP_006715674.1
- UniProtKB/TrEMBL
-
B4E2A9
- Conserved Domains (2) summary
-
- cd04020
Location:242 → 404
- C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
- cd08392
Location:101 → 228
- C2A_SLP-3; C2 domain first repeat present in Synaptotagmin-like protein 3
-
XM_047419560.1 → XP_047275516.1 synaptotagmin-like protein 3 isoform X4
- UniProtKB/TrEMBL
-
B4E2A9
-
XM_047419552.1 → XP_047275508.1 synaptotagmin-like protein 3 isoform X1
- UniProtKB/Swiss-Prot
- Q496J4, Q496J6, Q4VX76, Q5U3B9
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_047419557.1 → XP_047275513.1 synaptotagmin-like protein 3 isoform X2
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_047419553.1 → XP_047275509.1 synaptotagmin-like protein 3 isoform X1
- UniProtKB/Swiss-Prot
- Q496J4, Q496J6, Q4VX76, Q5U3B9
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_047419550.1 → XP_047275506.1 synaptotagmin-like protein 3 isoform X1
- UniProtKB/Swiss-Prot
- Q496J4, Q496J6, Q4VX76, Q5U3B9
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_047419554.1 → XP_047275510.1 synaptotagmin-like protein 3 isoform X2
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_047419549.1 → XP_047275505.1 synaptotagmin-like protein 3 isoform X1
- UniProtKB/Swiss-Prot
- Q496J4, Q496J6, Q4VX76, Q5U3B9
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_047419555.1 → XP_047275511.1 synaptotagmin-like protein 3 isoform X2
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_047419558.1 → XP_047275514.1 synaptotagmin-like protein 3 isoform X2
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_047419551.1 → XP_047275507.1 synaptotagmin-like protein 3 isoform X1
- UniProtKB/Swiss-Prot
- Q496J4, Q496J6, Q4VX76, Q5U3B9
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_047419561.1 → XP_047275517.1 synaptotagmin-like protein 3 isoform X4
- UniProtKB/TrEMBL
-
B4E2A9
-
XM_017011499.2 → XP_016866988.1 synaptotagmin-like protein 3 isoform X6
-
XM_017011496.2 → XP_016866985.1 synaptotagmin-like protein 3 isoform X4
- UniProtKB/TrEMBL
-
B4E2A9
- Conserved Domains (2) summary
-
- cd04020
Location:242 → 404
- C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
- cd08392
Location:101 → 228
- C2A_SLP-3; C2 domain first repeat present in Synaptotagmin-like protein 3
-
XM_047419562.1 → XP_047275518.1 synaptotagmin-like protein 3 isoform X5
- UniProtKB/TrEMBL
-
B4E2A9
-
XM_047419559.1 → XP_047275515.1 synaptotagmin-like protein 3 isoform X4
- UniProtKB/TrEMBL
-
B4E2A9
-
XM_005267222.5 → XP_005267279.1 synaptotagmin-like protein 3 isoform X4
See identical proteins and their annotated locations for XP_005267279.1
- UniProtKB/TrEMBL
-
B4E2A9
- Conserved Domains (2) summary
-
- cd04020
Location:242 → 404
- C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
- cd08392
Location:101 → 228
- C2A_SLP-3; C2 domain first repeat present in Synaptotagmin-like protein 3
-
XM_011536255.3 → XP_011534557.1 synaptotagmin-like protein 3 isoform X3
- Conserved Domains (2) summary
-
- cd04020
Location:247 → 409
- C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
- cd08392
Location:106 → 233
- C2A_SLP-3; C2 domain first repeat present in Synaptotagmin-like protein 3
Alternate T2T-CHM13v2.0
Genomic
-
NC_060930.1 Alternate T2T-CHM13v2.0
- Range
-
159886606..160010070
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054356804.1 → XP_054212779.1 synaptotagmin-like protein 3 isoform X1
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_054356801.1 → XP_054212776.1 synaptotagmin-like protein 3 isoform X1
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_054356814.1 → XP_054212789.1 synaptotagmin-like protein 3 isoform X2
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_054356824.1 → XP_054212799.1 synaptotagmin-like protein 3 isoform X6
-
XM_054356806.1 → XP_054212781.1 synaptotagmin-like protein 3 isoform X2
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_054356793.1 → XP_054212768.1 synaptotagmin-like protein 3 isoform X1
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_054356794.1 → XP_054212769.1 synaptotagmin-like protein 3 isoform X1
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_054356811.1 → XP_054212786.1 synaptotagmin-like protein 3 isoform X2
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_054356798.1 → XP_054212773.1 synaptotagmin-like protein 3 isoform X1
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_054356797.1 → XP_054212772.1 synaptotagmin-like protein 3 isoform X1
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_054356809.1 → XP_054212784.1 synaptotagmin-like protein 3 isoform X2
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_054356803.1 → XP_054212778.1 synaptotagmin-like protein 3 isoform X1
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_054356807.1 → XP_054212782.1 synaptotagmin-like protein 3 isoform X2
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_054356800.1 → XP_054212775.1 synaptotagmin-like protein 3 isoform X1
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_054356812.1 → XP_054212787.1 synaptotagmin-like protein 3 isoform X2
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_054356819.1 → XP_054212794.1 synaptotagmin-like protein 3 isoform X4
- UniProtKB/TrEMBL
-
B4E2A9
-
XM_054356818.1 → XP_054212793.1 synaptotagmin-like protein 3 isoform X4
- UniProtKB/TrEMBL
-
B4E2A9
-
XM_054356802.1 → XP_054212777.1 synaptotagmin-like protein 3 isoform X1
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_054356796.1 → XP_054212771.1 synaptotagmin-like protein 3 isoform X1
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_054356808.1 → XP_054212783.1 synaptotagmin-like protein 3 isoform X2
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_054356795.1 → XP_054212770.1 synaptotagmin-like protein 3 isoform X1
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_054356810.1 → XP_054212785.1 synaptotagmin-like protein 3 isoform X2
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_054356813.1 → XP_054212788.1 synaptotagmin-like protein 3 isoform X2
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_054356799.1 → XP_054212774.1 synaptotagmin-like protein 3 isoform X1
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_054356805.1 → XP_054212780.1 synaptotagmin-like protein 3 isoform X1
- UniProtKB/TrEMBL
-
B4DQA6
-
XM_054356822.1 → XP_054212797.1 synaptotagmin-like protein 3 isoform X4
- UniProtKB/TrEMBL
-
B4E2A9
-
XM_054356821.1 → XP_054212796.1 synaptotagmin-like protein 3 isoform X4
- UniProtKB/TrEMBL
-
B4E2A9
-
XM_054356820.1 → XP_054212795.1 synaptotagmin-like protein 3 isoform X4
- UniProtKB/TrEMBL
-
B4E2A9
-
XM_054356823.1 → XP_054212798.1 synaptotagmin-like protein 3 isoform X4
- UniProtKB/TrEMBL
-
B4E2A9
-
XM_054356816.1 → XP_054212791.1 synaptotagmin-like protein 3 isoform X4
- UniProtKB/TrEMBL
-
B4E2A9
-
XM_054356817.1 → XP_054212792.1 synaptotagmin-like protein 3 isoform X4
- UniProtKB/TrEMBL
-
B4E2A9
-
XM_054356815.1 → XP_054212790.1 synaptotagmin-like protein 3 isoform X3