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    GDPD4 glycerophosphodiester phosphodiesterase domain containing 4 [ Monodelphis domestica (gray short-tailed opossum) ]

    Gene ID: 100027656, updated on 3-Dec-2024

    Summary

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    Gene symbol
    GDPD4
    Gene description
    glycerophosphodiester phosphodiesterase domain containing 4
    See related
    EnsemblRapid:ENSMODG00000005090
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Monodelphis domestica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
    Orthologs
    human mouse all
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    Genomic context

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    See GDPD4 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2023_05 current mMonDom1.pri (GCF_027887165.1) 4 NC_077230.1 (340386653..340499364)
    103 previous assembly MonDom5 (GCF_000002295.2) 4 NC_008804.1 (336328019..336440670)

    Chromosome 4 - NC_077230.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103106010 Neighboring gene aquaporin 11 Neighboring gene p21 (RAC1) activated kinase 1 Neighboring gene uncharacterized LOC103106589 Neighboring gene myosin VIIA Neighboring gene calpain 5 Neighboring gene olfactory marker protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycerophosphodiester phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycerophosphodiester phosphodiesterase domain-containing protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mMonDom1.pri

    Genomic

    1. NC_077230.1 Reference mMonDom1.pri

      Range
      340386653..340499364
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007490909.3 → XP_007490971.1  glycerophosphodiester phosphodiesterase domain-containing protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A5F8H4H9
      Conserved Domains (2) summary
      cd08610
      Location:274 → 589
      GDPD_GDE6; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins
      COG0584
      Location:293 → 556
      UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]

    2. XM_007490912.3 → XP_007490974.1  glycerophosphodiester phosphodiesterase domain-containing protein 4 isoform X6

      UniProtKB/TrEMBL
      A0A5F8H4H9
      Conserved Domains (2) summary
      cd08610
      Location:274 → 589
      GDPD_GDE6; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins
      COG0584
      Location:293 → 556
      UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]

    3. XM_007490911.3 → XP_007490973.1  glycerophosphodiester phosphodiesterase domain-containing protein 4 isoform X5

      UniProtKB/TrEMBL
      A0A5F8H4H9
      Conserved Domains (2) summary
      cd08610
      Location:274 → 589
      GDPD_GDE6; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins
      COG0584
      Location:293 → 556
      UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]

    4. XM_016421973.2 → XP_016277459.1  glycerophosphodiester phosphodiesterase domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A5F8GH73, A0A5F8H4H9
      Related
      ENSMODP00000046968.1, ENSMODT00000069990.2
      Conserved Domains (2) summary
      cd08610
      Location:274 → 589
      GDPD_GDE6; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins
      COG0584
      Location:293 → 556
      UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]

    5. XM_007490910.3 → XP_007490972.1  glycerophosphodiester phosphodiesterase domain-containing protein 4 isoform X4

      UniProtKB/TrEMBL
      A0A5F8H4H9, F6YMM7
      Conserved Domains (2) summary
      cd08610
      Location:274 → 589
      GDPD_GDE6; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins
      COG0584
      Location:293 → 556
      UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]

    6. XM_056794937.1 → XP_056650915.1  glycerophosphodiester phosphodiesterase domain-containing protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A5F8GZA7, A0A5F8H4H9
      Related
      ENSMODP00000052441.1, ENSMODT00000082372.2

    RNA

    1. XR_008911428.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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