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    LINC02703 long intergenic non-protein coding RNA 2703 [ Homo sapiens (human) ]

    Gene ID: 102724165, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC02703provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2703provided by HGNC
    Primary source
    HGNC:HGNC:54218
    See related
    Ensembl:ENSG00000257067 AllianceGenome:HGNC:54218
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02703 in Genome Data Viewer
    Location:
    11q23.3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (115919636..115943338)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (115932738..115956440)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (115790354..115814056)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2698 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:115627599-115628798 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:115629978-115630512 Neighboring gene uncharacterized LOC107987165 Neighboring gene long intergenic non-protein coding RNA 900 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:115688718-115689307 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3919 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5546 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5547 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5548 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5549 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:115812040-115813239 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115822621-115823122 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115823123-115823622 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:115837993-115838563 Neighboring gene ribosomal protein L15 pseudogene 15 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115850711-115851212 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115851213-115851712 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr11:115856308-115857507 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5550 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5551 Neighboring gene uncharacterized LOC105369513 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115923025-115923556 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115923557-115924088 Neighboring gene NANOG hESC enhancer GRCh37_chr11:115930586-115931146 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5552 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5553

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Clone Names

    • AP000797.4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_187258.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP000797

    2. NR_187259.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP000797

    3. NR_187260.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP000797
      Related
      ENST00000785815.1

    4. NR_187261.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP000797

    5. NR_187262.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP000797
      Related
      ENST00000785816.1

    6. NR_187264.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP000797

    7. NR_187265.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP000797

    8. NR_187266.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP000797

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      115919636..115943338
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      115932738..115956440
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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