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    LOC100244793 polyamine oxidase 1 [ Vitis vinifera (wine grape) ]

    Gene ID: 100244793, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100244793
    Gene description
    polyamine oxidase 1
    Locus tag
    VIT_00013732001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100244793 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 1 NC_081805.1 (8442889..8446748)
    102 previous assembly 12X (GCF_000003745.3) 1 NC_012007.3 (8096310..8100376)

    Chromosome 1 - NC_081805.1Genomic Context describing neighboring genes Neighboring gene transcription factor WER Neighboring gene 2-methylene-furan-3-one reductase Neighboring gene polyamine oxidase 1-like Neighboring gene polyamine oxidase 1 Neighboring gene polyamine oxidase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyamine oxidase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081805.1 Reference ASM3070453v1 Primary Assembly

      Range
      8442889..8446748
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002264376.4 → XP_002264412.1  polyamine oxidase 1

      See identical proteins and their annotated locations for XP_002264412.1

      UniProtKB/TrEMBL
      A0A438EHT9, A0A438JNA5, D7TDE8
      Conserved Domains (2) summary
      PLN02676
      Location:7 → 489
      PLN02676; polyamine oxidase
      pfam13450
      Location:37 → 101
      NAD_binding_8; NAD(P)-binding Rossmann-like domain
    Nucleotide Protein
    Heading Accession and Version

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