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    LOC100265689 glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic [ Vitis vinifera (wine grape) ]

    Gene ID: 100265689, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC100265689
    Gene description
    glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic
    Locus tag
    VIT_00036751001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100265689 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 19 NC_081823.1 (26204496..26213614)
    102 previous assembly 12X (GCF_000003745.3) 19 NC_012025.3 (23001161..23010105)

    Chromosome 19 - NC_081823.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g20230 Neighboring gene uncharacterized LOC100243362 Neighboring gene defensin-like protein 1 Neighboring gene uncharacterized LOC100245090

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glucose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic
    Names
    glyceraldehyde-3-phosphate dehydrogenase, cytosolic-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081823.1 Reference ASM3070453v1 Primary Assembly

      Range
      26204496..26213614
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059735566.1 → XP_059591549.1  glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic isoform X1

    2. XM_002263227.4 → XP_002263263.1  glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic isoform X2

      See identical proteins and their annotated locations for XP_002263263.1

      UniProtKB/TrEMBL
      A0A438IAS3, D7T0U8
      Conserved Domains (3) summary
      PLN02272
      Location:1 → 429
      PLN02272; glyceraldehyde-3-phosphate dehydrogenase
      pfam00044
      Location:95 → 243
      Gp_dh_N; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
      pfam02800
      Location:248 → 405
      Gp_dh_C; Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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