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    LOC132445365 STARR-positive B cell enhancer mm9_chrX:92173712-92174012 [ Mus musculus (house mouse) ]

    Gene ID: 132445365, updated on 10-Feb-2024

    Summary

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    Gene symbol
    LOC132445365
    Gene description
    STARR-positive B cell enhancer mm9_chrX:92173712-92174012
    Gene type
    biological region
    Feature type(s)
    regulatory: enhancer
    RefSeq status
    REVIEWED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    This genomic region was identified as a putative B cell regulatory element by FAIRE-seq (formaldehyde-assisted isolation of regulatory elements sequencing), and was validated as an enhancer by STARR-seq (self-transcribing active regulatory region sequencing) in lipopolysaccharide-activated mouse splenic B cells. [provided by RefSeq, Oct 2023]
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    Genomic context

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    See LOC132445365 in Genome Data Viewer
    Location:
    chromosome: X
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (94021979..94022279)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene zinc finger, X-linked, duplicated A Neighboring gene predicted gene, 54087 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92123270-92123571 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92127397-92127698 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92128436-92128737 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92128771-92129071 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92130222-92130523 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92131186-92131487 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92132186-92132487 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92136714-92137015 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92137671-92137972 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92138430-92138731 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92138811-92139112 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92139803-92140104 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92142094-92142394 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92142861-92143162 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92145272-92145572 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92146544-92146845 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92146901-92147202 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92147877-92148177 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92150970-92151271 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92152080-92152381 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92152746-92153047 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92153049-92153349 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92156826-92157127 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92157184-92157485 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92158408-92158708 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92159204-92159505 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92159763-92160064 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92160302-92160603 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92160986-92161287 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92162208-92162509 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92162970-92163271 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92165507-92165808 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92167787-92168088 Neighboring gene germ cell-less homolog 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_47564 Neighboring gene spindlin family, member 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene regulatory networks STARR-ing B cells. Martínez de Paz A, et al. Nat Immunol, 2020 Feb. PMID 31873293, Free PMC Article
    2. Charting the cis-regulome of activated B cells by coupling structural and functional genomics. Chaudhri VK, et al. Nat Immunol, 2020 Feb. PMID 31873292

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_241783.1 

      Range
      101..401
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      94021979..94022279
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version