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    Grep1 glycine rich extracellular protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 320309, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Grep1provided by MGI
    Official Full Name
    glycine rich extracellular protein 1provided by MGI
    Primary source
    MGI:MGI:2443785
    See related
    Ensembl:ENSMUSG00000043747 AllianceGenome:MGI:2443785
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1520401A03Rik
    Summary
    Orthologous to human GREP1 (glycine rich extracellular protein 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 2.1), limb E14.5 (RPKM 1.0) and 4 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Grep1 in Genome Data Viewer
    Location:
    17 A3.3; 17 12.01 cM
    Exon count:
    43
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (23923582..23945299, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (23704608..23726451, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene claudin 6 Neighboring gene claudin 9 Neighboring gene protein kinase, membrane associated tyrosine/threonine 1 Neighboring gene progestin and adipoQ receptor family member IV Neighboring gene kringle containing transmembrane protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    glycine rich extracellular protein 1; glycine-rich extracellular protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      23923582..23945299 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017317755.3 → XP_017173244.1  glycine-rich extracellular protein 1 isoform X8

      UniProtKB/TrEMBL
      A0A0J9YVH6
      Conserved Domains (1) summary
      pfam09606
      Location:11 → 333
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

    2. XM_017317753.3 → XP_017173242.1  glycine-rich extracellular protein 1 isoform X8

      UniProtKB/TrEMBL
      A0A0J9YVH6
      Conserved Domains (1) summary
      pfam09606
      Location:11 → 333
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

    3. XM_017317750.2 → XP_017173239.1  glycine-rich extracellular protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A0J9YVH6
      Conserved Domains (1) summary
      pfam09606
      Location:80 → 381
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

    4. XM_017317748.2 → XP_017173237.1  glycine-rich extracellular protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A0J9YVH6
      Conserved Domains (1) summary
      pfam09606
      Location:126 → 391
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

    5. XM_017317756.2 → XP_017173245.1  glycine-rich extracellular protein 1 isoform X9

      Conserved Domains (1) summary
      pfam09606
      Location:92 → 326
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

    6. XM_017317749.2 → XP_017173238.1  glycine-rich extracellular protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A0J9YVH6
      Conserved Domains (1) summary
      pfam09606
      Location:80 → 402
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

    7. XM_017317746.2 → XP_017173235.1  glycine-rich extracellular protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A0J9YVH6
      Conserved Domains (1) summary
      pfam09606
      Location:80 → 402
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

    8. XM_017317752.2 → XP_017173241.1  glycine-rich extracellular protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A0J9YVH6

    9. XM_017317751.2 → XP_017173240.1  glycine-rich extracellular protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A0J9YVH6
      Conserved Domains (1) summary
      pfam09606
      Location:80 → 369
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

    10. XM_017317747.2 → XP_017173236.1  glycine-rich extracellular protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A0J9YVH6

    11. XM_017317758.2 → XP_017173247.1  glycine-rich extracellular protein 1 isoform X11

      UniProtKB/TrEMBL
      A0A0J9YVH6
      Conserved Domains (1) summary
      pfam09606
      Location:49 → 436
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

    12. XM_017317757.2 → XP_017173246.1  glycine-rich extracellular protein 1 isoform X10

      UniProtKB/TrEMBL
      A0A0J9YVH6
      Related
      ENSMUSP00000144664.2, ENSMUST00000201734.4
      Conserved Domains (1) summary
      pfam09606
      Location:49 → 448
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

    RNA

    1. XR_001782162.2 RNA Sequence

    2. XR_876666.3 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_177132.3: Suppressed sequence

      Description
      NM_177132.3: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
    Nucleotide Protein Strain
    Heading Accession and Version

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