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    pou2af1 POU class 2 homeobox associating factor 1 [ Anolis carolinensis (green anole) ]

    Gene ID: 100553601, updated on 8-Mar-2024

    Summary

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    Gene symbol
    pou2af1
    Gene description
    POU class 2 homeobox associating factor 1
    See related
    Ensembl:ENSACAG00000006629
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anolis carolinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
    Orthologs
    human mouse all
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    Genomic context

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    See pou2af1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) Unplaced Scaffold NW_026943819.1 (1814429..1844101, complement)
    102 previous assembly AnoCar2.0 (GCF_000090745.1) Unplaced Scaffold NW_003339068.1 (323748..349633)

    NW_026943819.1Genomic Context describing neighboring genes Neighboring gene POU class 2 homeobox associating factor 2 Neighboring gene POU class 2 homeobox associating factor 3 Neighboring gene ankyrin repeat domain-containing protein 35-like Neighboring gene uncharacterized LOC134292332

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables POU domain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    POU domain class 2-associating factor 1
    Names
    POU class 2 associating factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAnoCar3.1.pri

    Genomic

    1. NW_026943819.1 Reference rAnoCar3.1.pri

      Range
      1814429..1844101 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008121081.3 → XP_008119288.1  POU domain class 2-associating factor 1

      UniProtKB/TrEMBL
      H9GBP6
      Related
      ENSACAP00000006478.3
      Conserved Domains (1) summary
      pfam09310
      Location:21 → 259
      PD-C2-AF1; POU domain, class 2, associating factor 1
    Nucleotide Protein
    Heading Accession and Version

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