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    Pcnx2 pecanex 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 307949, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Pcnx2provided by RGD
    Official Full Name
    pecanex 2provided by RGD
    Primary source
    RGD:1305883
    See related
    EnsemblRapid:ENSRNOG00000028580 AllianceGenome:RGD:1305883
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Pcnxl2; RGD1305883
    Summary
    Predicted to be located in membrane. Orthologous to human PCNX2 (pecanex 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 48.5), Lung (RPKM 9.1) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    See Pcnx2 in Genome Data Viewer
    Location:
    19q12
    Exon count:
    37
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (70616240..70766869, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (53718920..53869559, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (58583000..58736069, complement)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene microtubule-associated protein 10 Neighboring gene nucleoside-triphosphatase, cancer-related Neighboring gene involucrin-like Neighboring gene uncharacterized LOC120098634 Neighboring gene mitogen-activated protein kinase kinase kinase 21 Neighboring gene potassium two pore domain channel subfamily K member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    pecanex-like protein 2
    Names
    pecanex 1
    pecanex homolog 2
    pecanex-like 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001427189.1 → NP_001414118.1  pecanex-like protein 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000019
      UniProtKB/TrEMBL
      D4AB99
      Related
      ENSRNOP00000038464.8, ENSRNOT00000030077.9

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      70616240..70766869 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063278079.1 → XP_063134149.1  pecanex-like protein 2 isoform X1

      UniProtKB/TrEMBL
      D4AB99

    2. XM_063278080.1 → XP_063134150.1  pecanex-like protein 2 isoform X2

    3. XM_063278083.1 → XP_063134153.1  pecanex-like protein 2 isoform X6

      UniProtKB/TrEMBL
      A6KJ41

    4. XM_063278081.1 → XP_063134151.1  pecanex-like protein 2 isoform X3

    5. XM_063278082.1 → XP_063134152.1  pecanex-like protein 2 isoform X4

    6. XM_039098293.2 → XP_038954221.1  pecanex-like protein 2 isoform X5

      Conserved Domains (1) summary
      PHA03307
      Location:336 → 646
      PHA03307; transcriptional regulator ICP4; Provisional
    Nucleotide Protein Strain
    Heading Accession and Version

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