U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC120093086 sulfotransferase 1C2-like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 120093086, updated on 4-Jan-2025

    Summary

    Go to the top of the page Help
    Symbol
    LOC120093086provided by RGD
    Full Name
    sulfotransferase 1C2-likeprovided by RGD
    Primary source
    RGD:41320429
    See related
    EnsemblRapid:ENSRNOG00000065530 AllianceGenome:RGD:41320429
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Enables aryl sulfotransferase activity. Involved in sulfation. Located in lysosome. [provided by Alliance of Genome Resources, Jan 2025]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC120093086 in Genome Data Viewer
    Location:
    9q11
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (7032812..7051281)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (6962604..7131268)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene shugoshin 1 Neighboring gene RIKEN cDNA 4932415M13 gene like Neighboring gene sulfotransferase family 1C member 2A Neighboring gene brain acid soluble protein 1-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Enzymatic properties, tissue-specific expression, and lysosomal location of two highly homologous rat SULT1C2 sulfotransferases. Xiangrong L, et al. Biochem Biophys Res Commun, 2000 May 27. PMID 10872834
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables aryl sulfotransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables aryl sulfotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in sulfation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in sulfation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in lysosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    sulfotransferase 1C2-like
    Names
    sulfotransferase 1C2A
    sulfotransferase 1C2A-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428982.1 → NP_001415911.1  sulfotransferase 1C2-like

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/Swiss-Prot
      F1LZL1, Q3ZAV3, Q9WUW8
      UniProtKB/TrEMBL
      A0A0G2JUM0

    2. NM_001428983.1 → NP_001415912.1  sulfotransferase 1C2-like

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/Swiss-Prot
      F1LZL1, Q3ZAV3, Q9WUW8
      UniProtKB/TrEMBL
      A0A0G2JUM0

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      7032812..7051281
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039084405.2 → XP_038940333.2  sulfotransferase 1C2-like isoform X1

      UniProtKB/Swiss-Prot
      F1LZL1, Q3ZAV3, Q9WUW8
      UniProtKB/TrEMBL
      A0A0G2JUM0

    2. XM_039084404.2 → XP_038940332.2  sulfotransferase 1C2-like isoform X1

      UniProtKB/Swiss-Prot
      F1LZL1, Q3ZAV3, Q9WUW8
      UniProtKB/TrEMBL
      A0A0G2JUM0
      Related
      ENSRNOP00000069149.3, ENSRNOT00000082579.3

    3. XM_039084409.2 → XP_038940337.2  sulfotransferase 1C2-like isoform X2

      UniProtKB/TrEMBL
      A6KQA1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases