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    side motor axon guidance molcule sidestep [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 663211, updated on 28-Dec-2024

    Summary

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    Gene symbol
    side
    Gene description
    motor axon guidance molcule sidestep
    Locus tag
    TcasGA2_TC009766
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Orthologs
    fruit fly all
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    Genomic context

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    See side in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 3 NC_087396.1 (16959809..17002701, complement)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG7 NC_007422.5 (7769981..7807675)

    Chromosome 3 - NC_087396.1Genomic Context describing neighboring genes Neighboring gene abhydrolase domain-containing protein 2 Neighboring gene sidestep IV Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene sidestep VI Neighboring gene microRNA mir-6017

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    B-cell receptor CD22; hemicentin-1; hemicentin-2
    Names
    AUGUSTUS-3.0.2_09766
    GLEAN_09766
    Neural cell adhesion molecule 2-like Protein
    neural cell adhesion molecule 1
    sidestep

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087396.1 Reference icTriCast1.1 Primary Assembly

      Range
      16959809..17002701 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_064355499.1 → XP_064211569.1  hemicentin-2 isoform X4

      UniProtKB/TrEMBL
      A0A139WE87

    2. XM_015982146.2 → XP_015837632.1  hemicentin-2 isoform X7

      UniProtKB/TrEMBL
      A0A139WE87
      Conserved Domains (6) summary
      smart00408
      Location:372 → 437
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:370 → 448
      IG_like; Immunoglobulin like
      cd00063
      Location:580 → 651
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07686
      Location:34 → 144
      V-set; Immunoglobulin V-set domain
      pfam13927
      Location:469 → 531
      Ig_3; Immunoglobulin domain
      cl11960
      Location:274 → 342
      Ig; Immunoglobulin domain

    3. XM_064355500.1 → XP_064211570.1  hemicentin-2 isoform X5

      UniProtKB/TrEMBL
      A0A139WE87

    4. XM_015982144.2 → XP_015837630.1  hemicentin-2 isoform X2

      UniProtKB/TrEMBL
      A0A139WE87
      Conserved Domains (6) summary
      smart00408
      Location:369 → 434
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:367 → 445
      IG_like; Immunoglobulin like
      cd00063
      Location:577 → 648
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07686
      Location:34 → 144
      V-set; Immunoglobulin V-set domain
      pfam13927
      Location:466 → 528
      Ig_3; Immunoglobulin domain
      cl11960
      Location:271 → 339
      Ig; Immunoglobulin domain

    5. XM_008201549.3 → XP_008199771.1  hemicentin-1 isoform X3

      UniProtKB/TrEMBL
      A0A139WE87, D6WPK5
      Conserved Domains (6) summary
      smart00408
      Location:372 → 437
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:370 → 448
      IG_like; Immunoglobulin like
      cd00063
      Location:575 → 646
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07686
      Location:34 → 144
      V-set; Immunoglobulin V-set domain
      pfam13927
      Location:469 → 531
      Ig_3; Immunoglobulin domain
      cl11960
      Location:274 → 342
      Ig; Immunoglobulin domain

    6. XM_015982143.2 → XP_015837629.1  hemicentin-1 isoform X1

      UniProtKB/TrEMBL
      A0A139WE87
      Conserved Domains (6) summary
      smart00408
      Location:372 → 437
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:370 → 448
      IG_like; Immunoglobulin like
      cd00063
      Location:580 → 651
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07686
      Location:34 → 144
      V-set; Immunoglobulin V-set domain
      pfam13927
      Location:469 → 531
      Ig_3; Immunoglobulin domain
      cl11960
      Location:274 → 342
      Ig; Immunoglobulin domain

    7. XM_015982145.2 → XP_015837631.1  hemicentin-2 isoform X6

      UniProtKB/TrEMBL
      A0A139WE87
      Conserved Domains (5) summary
      smart00408
      Location:282 → 347
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:280 → 358
      IG_like; Immunoglobulin like
      cd00063
      Location:518 → 561
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam13927
      Location:379 → 441
      Ig_3; Immunoglobulin domain
      cl11960
      Location:184 → 252
      Ig; Immunoglobulin domain

    8. XM_015982147.2 → XP_015837633.1  B-cell receptor CD22 isoform X8

      Conserved Domains (5) summary
      smart00408
      Location:226 → 291
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:224 → 302
      IG_like; Immunoglobulin like
      cd00063
      Location:462 → 505
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam13927
      Location:323 → 385
      Ig_3; Immunoglobulin domain
      cl11960
      Location:128 → 196
      Ig; Immunoglobulin domain
    Nucleotide Protein Strain
    Heading Accession and Version

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