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    Ndg Nidogen [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 661043, updated on 10-May-2024

    Summary

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    Gene symbol
    Ndg
    Gene description
    Nidogen
    Locus tag
    TcasGA2_TC008043
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Orthologs
    fruit fly all
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    Genomic context

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    See Ndg in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 9 NC_087402.1 (4375582..4380187)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG4 NC_007419.2 (4253504..4258122)

    Chromosome 9 - NC_087402.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain-containing protein 97 Neighboring gene multidrug resistance-associated protein 7 Neighboring gene kinesin-like protein CG14535 Neighboring gene microRNA mir-3879 Neighboring gene anaphase-promoting complex subunit 11 Neighboring gene zinc finger protein 112 Neighboring gene uncharacterized LOC103312658 Neighboring gene tetratricopeptide repeat protein 29

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-matrix adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nidogen
    Names
    AUGUSTUS-3.0.2_08043
    GLEAN_08043
    Nidogen-2-like Protein
    nidogen-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087402.1 Reference icTriCast1.1 Primary Assembly

      Range
      4375582..4380187
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_967232.4 → XP_972325.1  nidogen

      See identical proteins and their annotated locations for XP_972325.1

      UniProtKB/TrEMBL
      D1ZZG7
      Conserved Domains (8) summary
      smart00135
      Location:1081 → 1120
      LY; Low-density lipoprotein-receptor YWTD domain
      smart00539
      Location:94 → 243
      NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
      cd05819
      Location:1088 → 1123
      NHL; NHL repeat [structural motif]
      pfam01826
      Location:861 → 881
      TIL; Trypsin Inhibitor like cysteine rich domain
      pfam06247
      Location:550 → 692
      Plasmod_Pvs28; Plasmodium ookinete surface protein Pvs28
      pfam07474
      Location:304 → 486
      G2F; G2F domain
      pfam12947
      Location:575 → 610
      EGF_3; EGF domain
      cl18310
      Location:1061 → 1265
      NHL; NHL repeat unit of beta-propeller proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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