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    LARP4AA La ribonucleoprotein 4Aa [ Latimeria chalumnae (coelacanth) ]

    Gene ID: 102357562, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LARP4AA
    Gene description
    La ribonucleoprotein 4Aa
    See related
    Ensembl:ENSLACG00000019090
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Latimeria chalumnae
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
    Also known as
    LARP4
    Orthologs
    zebrafish all
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    Genomic context

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    See LARP4AA in Genome Data Viewer
    Location:
    chromosome: 28
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 28 NC_088166.1 (1140342..1199051, complement)
    101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819012.1 (7383094..7437533)

    Chromosome 28 - NC_088166.1Genomic Context describing neighboring genes Neighboring gene 52 kDa repressor of the inhibitor of the protein kinase Neighboring gene 5S ribosomal RNA Neighboring gene ankyrin repeat and SOCS box containing 8 Neighboring gene disco-interacting protein 2 homolog Ba Neighboring gene methyl-CpG binding domain protein 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 3'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    la ribonucleoprotein 4Aa
    Names
    La ribonucleoprotein 4
    La ribonucleoprotein domain family member 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLatCha1.pri

    Genomic

    1. NC_088166.1 Reference fLatCha1.pri

      Range
      1140342..1199051 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014484771.2 → XP_014340257.1  la ribonucleoprotein 4Aa isoform X5

      UniProtKB/TrEMBL
      H3BIK4, M3XGM8
      Related
      ENSLACP00000021884.1

    2. XM_064552522.1 → XP_064408592.1  la ribonucleoprotein 4Aa isoform X3

      UniProtKB/TrEMBL
      H3BIK4

    3. XM_005986277.3 → XP_005986339.1  la ribonucleoprotein 4Aa isoform X7

      UniProtKB/TrEMBL
      H3BIK4
      Related
      ENSLACP00000021725.1
      Conserved Domains (3) summary
      cd08035
      Location:135 → 209
      LARP_4; La RNA-binding domain of La-related protein 4
      PHA03193
      Location:543 → 679
      PHA03193; tegument protein VP11/12; Provisional
      cl17169
      Location:214 → 290
      RRM_SF; RNA recognition motif (RRM) superfamily

    4. XM_064552524.1 → XP_064408594.1  la ribonucleoprotein 4Aa isoform X6

      UniProtKB/TrEMBL
      H3BIK4

    5. XM_064552523.1 → XP_064408593.1  la ribonucleoprotein 4Aa isoform X4

      UniProtKB/TrEMBL
      H3BIK4

    6. XM_064552521.1 → XP_064408591.1  la ribonucleoprotein 4Aa isoform X2

      UniProtKB/TrEMBL
      H3BIK4

    7. XM_064552520.1 → XP_064408590.1  la ribonucleoprotein 4Aa isoform X1

      UniProtKB/TrEMBL
      H3BIK4
    Nucleotide Protein
    Heading Accession and Version

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