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    lcp2a lymphocyte cytosolic protein 2a [ Oncorhynchus nerka (sockeye salmon) ]

    Gene ID: 115136147, updated on 8-May-2024

    Summary

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    Gene symbol
    lcp2a
    Gene description
    lymphocyte cytosolic protein 2a
    See related
    EnsemblRapid:ENSONEG00000031941
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus nerka
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
    Orthologs
    zebrafish all
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    Genomic context

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    See lcp2a in Genome Data Viewer
    Location:
    chromosome: LG10
    Exon count:
    22
    Annotation release Status Assembly LG Location
    RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG10 NC_088405.1 (91374025..91389226, complement)
    100 previous assembly Oner_1.0 (GCF_006149115.1) LG10 NC_042544.1 (63400818..63415929, complement)

    Linkage Group LG10 - NC_088405.1Genomic Context describing neighboring genes Neighboring gene NHP2 ribonucleoprotein homolog (yeast) Neighboring gene forkhead box I3a Neighboring gene putative ammonium transporter 1 Neighboring gene zinc finger, matrin-type 2 Neighboring gene stem-loop binding protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lymphocyte cytosolic protein 2a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Oner_Uvic_2.0 Primary Assembly

    Genomic

    1. NC_088405.1 Reference Oner_Uvic_2.0 Primary Assembly

      Range
      91374025..91389226 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029671650.2 → XP_029527510.1  lymphocyte cytosolic protein 2a

      Related
      ENSONEP00000071441.1

    2. XM_029671649.2 → XP_029527509.1  lymphocyte cytosolic protein 2a

      Conserved Domains (3) summary
      cd09522
      Location:10 → 78
      SAM_SLP76; SAM domain of SLP76 subfamily
      PHA03247
      Location:147 → 411
      PHA03247; large tegument protein UL36; Provisional
      cl15255
      Location:412 → 532
      SH2; Src homology 2 (SH2) domain
    Nucleotide Protein
    Heading Accession and Version

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